barSeed - Barley Seed Development Database

Probe CUST_326_PI415269222

Source Contig TA34731_4513

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_326_PI415269222	Hv_44K_v2	ATCGACATGAACGAGATCTCCAACTTCTACAACCCGGAGCCGATGAACGCGCTCGACGAC	545	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_66806.6	2866	2e-24	1391 - 1450	100	60 / 60	plus	ABC07937 ABC07938 ABC12639
MLOC	MLOC_66806.7	3080	2e-24	1483 - 1542	100	60 / 60	plus	ABC07937 ABC07938 ABC12639
MLOC	MLOC_66806.4	3995	2e-24	2432 - 2491	100	60 / 60	plus	ABC07937 ABC07938 ABC12639
MLOC	MLOC_66806.2	3225	2e-24	1627 - 1686	100	60 / 60	plus	ABC07937 ABC07938 ABC12639
MLOC	MLOC_66806.3	3579	2e-24	1957 - 2016	100	60 / 60	plus	ABC07937 ABC07938 ABC12639
JLOC1	JLOC1_44060.2	3246	8e-25	1603 - 1662	100	60 / 60	plus
JLOC1	JLOC1_44060.1	3286	8e-25	1643 - 1702	100	60 / 60	plus
Harvest21	ABC07937	7209	3e-25	5788 - 5847	100	60 / 60	plus	ABC07937
Harvest21	ABC07938	2685	1e-23	1106 - 1165	98	59 / 60	plus	ABC07938
Harvest35	U35_16369	7262	3e-25	5686 - 5745	100	60 / 60	plus

Contig Sequence (1162 bp)

>TA34731_4513 1162 Hv_44K_v2
GCGGCGGCGTCCTCGACTTCTACTTCTTCGCCGGCCCCAACCCCCTCGCCGTCGTCGACC
AGTACACCCAGCTCATCGGCCGCCCTGCCCCCATGCCGTACTGGTCCTTCGGGTTCCACC
AGTGCCGGTACGGGTACCTGAACGTGTCTGACCTGGAGCGTGTGGTGGCCGGCTACGCCN
AGGCCAGGATCCCGCTGGAGGTGATGTGGACCGATATCGACTACATGGACGGGTTCAAGG
ACTTCACCTTGGACCGTGTCAACTTCACCGCCGCCGAGCTCCGGCCGTTCGTCGACCGGC
TTCACCGGAACGCCCAGAAATACGTCCTCATCCTAGACCCAGGGATCCGCATCGACGCGA
CGTACGGGACGTTCGTCCGCGGGATGCAGCAGGACATCTTCCTGAAGCGGAACGGCACAA
ACTTCGTCGGCAACGTGTGGCCGGGCGACGTCTACTTCCCGGACTTCATGCACCCGCGCG
CCGCCGAGTTCTGGGCGCGGGAGATCTCCCTCTTCCGCCGGACCATCCCCGTCGACGGGC
TGTGGATCGACATGAACGAGATCTCCAACTTCTACAACCCGGAGCCGATGAACGCGCTCG
ACGACCCGCCGTACCGGATCAACAACGACGGCACGGGCCGCCCCATCAACAACAAGACGG
TGCCGGCCTCCGCCGTGCACTACGGCGGCGTCACCGAGTACGACGCGCACAACCTCTTCG
GCCTCCTCGAGGCCCGCGCCACGCACCGCGCGCTGCTGAGGGACACCGGCCGCCGCCCCT
TCGTGCTCAGCAGGTCCACCTTCGTCGGCTCCGGCCGGTACACCGCTCACTGGACTGGCG
ACAACGCCGCCACGTGGGGCGACCTGCGCTACTCCATCAACACCATGCTCAGCTTCGGCC
TCTTCGGCATGCCCATGATCGGCGCCGACATCTGCGGCTTCAACGGCAACACGACAGAGG
AGCTCTGCGGTCGGTGGATCCAGCTCGGCGCCTTCTACCCCTTCTCGAGGGACCACTCGG
CGATCTTCACCGTCCGGCGAGAGTTGTACCTGTGGCCGTCGGTGGCGGCGTCGGCGAGGA
AAGCGCTCGGGCTCCGGTACCAGCTGCTCCCTTACTTCTACACGCTCATGTACGAGGCGC
ACATGACGGGGGCGCCCATCGC

Homology of Contig TA34731_4513 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os06g46284.2	886	protein\|glycosyl hydrolase, family 31, putative, expressed
Brachypodium v1_2	Bradi1g32650.1	897
Arabidopsis v10	AT5G11720.1	902	Glycosyl hydrolases family 31 protein \| chr5:3776840-3780025 FORWARD LENGTH=902