barSeed - Barley Seed Development Database

Probe CUST_32697_PI390587928

Source Contig U35_43247

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_32697_PI390587928	Hv_44K_v2	ATGGATCCCTGCAAGTTCCGGCCGTCGAGCAGCTTCGACACCAAGACGACGACGACGAAC	69	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK361207	1802	2e-24	89 - 148	100	60 / 60	plus	ABC01846 ABC37511
JLOC1	JLOC1_7886.2	1710	8e-25	178 - 237	100	60 / 60	plus
JLOC1	JLOC1_7886.1	1291	8e-25	95 - 154	100	60 / 60	plus
Harvest21	ABC51580	598	3e-25	73 - 132	100	60 / 60	plus
Harvest21	ABC45754	484	3e-25	51 - 110	100	60 / 60	plus
Harvest21	ABC39710	317	3e-25	70 - 129	100	60 / 60	plus
Harvest21	ABC28316	642	3e-25	64 - 123	100	60 / 60	plus
Harvest21	ABC01842	1852	3e-25	84 - 143	100	60 / 60	plus
Harvest35	U35_49711	598	3e-25	73 - 132	100	60 / 60	plus
Harvest35	U35_43247	317	3e-25	70 - 129	100	60 / 60	plus
Harvest35	U35_29127	642	3e-25	64 - 123	100	60 / 60	plus
Harvest35	U35_14772	1781	3e-25	84 - 143	100	60 / 60	plus

Contig Sequence (317 bp)

>U35_43247 317 Hv_44K_v2
CAGAGTGAGTGAGCGAGCGACACTCCCCACCCCCAGCTTAGCTACGCTACTTCACTCACT
CGAGGAAGGATGGATCCCTGCAAGTTCCGGCCGTCGAGCAGCTTCGACACCAAGACGACG
ACGACGAACGCCGGGCAGCCGGTGTGGAACGACAACGAGGCGCTCACCTGCGCCGACTTC
CTCCGCGCGCCCGGGGCGCGCACGCCGGTCATCGTCCGCTTCTCCACCGTGATCCACGAG
CGCGGCTCGCCGGAGACCATCCGTGACCCGCGCGGGTTCGCCGTCAAGTTTTACACGCGC
GAGGGCAACTGGGACCT

Homology of Contig U35_43247 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None