barSeed - Barley Seed Development Database

Probe CUST_3265_PI390587928

Source Contig U35_4178

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3265_PI390587928	Hv_44K_v2	TTCCAGTTCAAGATCCAGCAAAGATGACTGAAACCATTGTCAAAGCACTCGAAATGACTG	2194	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK358163	2036	2e-24	1248 - 1307	100	60 / 60	plus	ABC12242
MLOC	MLOC_61342.1	1644	2e-24	605 - 664	100	60 / 60	minus	ABC12242
JLOC1	JLOC1_40082.2	1650	8e-25	987 - 1046	100	60 / 60	plus
JLOC1	JLOC1_40082.1	1621	2e-21	964 - 1017	100	54 / 54	plus
Harvest21	ABC09324	1437	3e-25	1378 - 1437	100	60 / 60	plus
Harvest35	U35_4178	2254	3e-25	2195 - 2254	100	60 / 60	plus

Contig Sequence (2254 bp)

>U35_4178 2254 Hv_44K_v2
GCAGATCAATTGCATCCTGAATTTTCCTAGTTCACCATGAAGCAAATTAGTTTTCTTCTG
CCTGCATAAAAACCAAACTGTCCAAACATAAATTCTAATGCTTAAAATGGCGTTCTATTC
TGAAGCCAGGACTCCAGGATCGATGCTGAGTGGCAACTAACCGGCTCTCCCGTCCCTCGC
CACCTGACGCCGAGCAATGTTTATGCATGCTTGCAACCTACACCGAGAGACTCATCCACG
TCCTCCGTGTGTCCCGCAGTAGCAGGCAGCAGCGCATCGACGACGACATGATATTTCACA
GCTCTAGCATCCTGGCGTGTGCATATTCGGAGACATCAATGGATTACAGTGGAACTAATG
GGAACCTACAAGTTGGCAACCGCTTGTTTCACCAACGCTAGCGACACATTCTCACAGGGA
GTGTCCAGGTCACCGACGCGGTTGAGACATATGTTATCTTCTGCCTATGTCAACCTAGCC
ATATCAAGACCGTGTGGACACAATAATAACAGGTCCAAGAGAAGTAGAAGCAAAGATCTA
CTCAAGATGGTATGCATTACTTCAACTGCCCTTGAAATTTCCTATGCAACTCGGTGCCAT
ATGAGAAGTCATAATCTAGCACGCTGCGCGTCCAGCGTGTCGTCATCAGACCATAATCTA
GCACGCTGCGCAAGGCTACCGAAGACCCCATTTTTGTATTCTCATTTGAGCCATAATCCA
GCACGCTGCGCGTCCAGCGTGTCGTCATCAGACCTGAGAGGCAGACTCACGGTGGAGGTC
CTCATGCGCTGCAGATCCCCCGTTTCCTTTTGAAAGAAAGACTAGACTCGAGGGAGAGTC
AAGTCAACTCAGTCCAGATCTCGTTGGGTTCATTTATATGCGACTTCGGCCGGCTAGCAA
CGAAGCCATTCATCTCACAAGCCTCATCCCCATTTCGTTGTTCCCTTCCCTGCATCTACC
CCAAGTGTTGGATCTTCTCCAGCTATTATAACTGTGGAGCTTCGAAAACATGGTATGGGA
TTTGAGGAAAAGCTGTTGCAGATTTTGGGAAAGTGATAACGGAAACCTCCATAGGTCAAG
CACTATGCCGGGGGTGATAAAGGATACTGAGATAACTACTGAAACTACGGGTCCATCAAA
TCTGGAAAGGTCAAAAACTGAGAGGCGCAAACAAAGTAACCCAGCTGATGATCCTGCTAA
ACAGTTATTGGATGATAAGATTTCCATAAGGAAAAAGCTCAAAATGTTAAATCGAATCGC
TACAGTGAAGGATGATGGAACTGTGGTTGTTAATGTACCAAGTACACTAGAAGCGACTCC
AATTGACGTTGGAGCAGTGGATGGCTATGAGGATGTTGTTGTTGAAGAGTCATTAGATGG
ATCAGATATACCATACAAGCTCTCCGATACAGATTGTTATACTTATTGTGGGTACAAGGG
GAGATGTTCAGCCATTTGTTGCTATAGGAAAACGGTTACAGGATTATGGACACCGCGTAA
GATTAGCCACTCATGCCAATTACAAAGAGTTCATACTCACAGCTGGGCTGGAGTTTTTTT
CCACTTGGTGGAGATCCAAAAGTACTTGCTGAATACATGGTGAAGAATAAAGGATTTCTA
CCTTCAGGTCCATCAGAAATTCCTATTCAAAGAAAACAAATGAAAGAAATTATATTTTCC
TTATATCCTGCATGCAAGGATCCTGATCCTGACACCGGTATTCCTTTCAAAGTGGACGCA
ATTATTGCCAACCCACCAGCATATGGACATACACATGTGGCAGAGGCACTAAAAGTACCC
ATTCATATATTCTTTACCATGCCATGGACGCCAACTAGTGAATTTCCTCATCCTCTTTCT
CGCGTGAAAACATCAGCTGGATATCGACTTTCTTACCAAATTGTCGACTCTATGATTTGG
CTTGGGATACGTGATATGATAAACGAATTCAGGAAAAAGAAGTTGAAGCTGCGTCCAGTA
ACATACCTAAGTGGTGCACAGGGTTCTGGAAGTGACATTCCTCATGGATACATCTGGAGT
CCTCATCTTGTCCCAAAACCGAAAGACTGGGGCCCCAAGATCGATGTTGTTGGATTTTGC
TTTCTTGATCTTGCTTCTGATTACGTACCTCCAGAAGAACTTGTGAAATGGCTTGAAGCT
GGTGACAAGCCAATTTATGTTGGTTTTGGTAGCCTTCCAGTTCAAGATCCAGCAAAGATG
ACTGAAACCATTGTCAAAGCACTCGAAATGACTG

Homology of Contig U35_4178 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g04254.1	610	0.0	protein\|sterol 3-beta-glucosyltransferase, putative, expressed
Brachypodium v1_2	Bradi5g01230.1	615	0.0
Arabidopsis v10	AT3G07020.2	637	1e-161	UDP-Glycosyltransferase superfamily protein \| chr3:2218120-2221590 REVERSE LENGTH=637