barSeed - Barley Seed Development Database

Probe CUST_32650_PI390587928

Source Contig U35_43273

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_32650_PI390587928	Hv_44K_v2	CTCCATAAAGTTTGAGAAGGAAATTGAGTGTGGCGGCGGCTATATTAAGCTAATGTCTGG	496	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_56781.1	278	2e-24	115 - 174	100	60 / 60	minus	ABC02747 ABC34622
MLOC	MLOC_32109.1	264	7e-23	134 - 193	98	59 / 60	plus	ABC02747 ABC34622
MLOC	MLOC_32109.2	286	7e-23	103 - 162	98	59 / 60	plus	ABC02747 ABC34622
MLOC	MLOC_32109.3	290	7e-23	161 - 220	98	59 / 60	plus	ABC02747 ABC34622
MLOC	MLOC_31680.2	708	7e-23	9 - 68	98	59 / 60	minus	ABC02747 ABC34622
MLOC	MLOC_31680.1	571	7e-23	10 - 69	98	59 / 60	minus	ABC02747 ABC34622
MLOC	AK248906.1	1621	3e-21	359 - 418	97	58 / 60	plus	ABC02747 ABC34622 ABC49879
MLOC	MLOC_74541.1	612	3e-21	509 - 568	97	58 / 60	plus	ABC02747 ABC34622
JLOC1	JLOC1_20782.1	572	4e-23	503 - 562	98	59 / 60	plus
JLOC1	JLOC1_49674.1	629	2e-21	461 - 520	97	58 / 60	plus
Harvest21	ABC39766	556	3e-25	497 - 556	100	60 / 60	plus
Harvest21	ABC02744	457	3e-25	344 - 403	100	60 / 60	plus
Harvest21	ABC34622	601	1e-23	301 - 360	98	59 / 60	minus	ABC34622
Harvest21	ABC02743	693	1e-23	608 - 667	98	59 / 60	plus
Harvest21	ABC02747	1628	6e-22	347 - 406	97	58 / 60	plus	ABC02747
Harvest35	U35_43273	556	3e-25	497 - 556	100	60 / 60	plus
Harvest35	U35_38720	601	1e-23	301 - 360	98	59 / 60	minus
Harvest35	U35_38719	621	1e-23	536 - 595	98	59 / 60	plus
Harvest35	U35_15028	1655	6e-22	355 - 414	97	58 / 60	plus

Contig Sequence (556 bp)

>U35_43273 556 Hv_44K_v2
GGCGCGGCCCGCAACCAAGGCGAGGGGCCAGGACGCTCTACGTCGCAGGGACCTCAAGCT
CACGACGGCCGGGGCCGGGTACAAGGACGAGAAGGCCATCCTAGCCGACGCCTTCAGGAG
GATGGTGGCCGCCATCCAGCTGGACCACGCTATCAATGGCAGCTACGACGGCCTGCTCGT
GCTAGCCGGTGTCAATGTGTCCGTCCGTTCCCCGGACGACGAGCTCAAGTTCGGGTGGAT
GAATCGTACAGGCTGACCGTGCCTTCAATCGGGAGTCCCCTATATGCCCGAATTGAGATG
GCTGGGAGACACATTGGGTGAAATCCGATTGGAAAAGGAGCGAAGGGAAAGCCGGTACAT
TCAAGCACATGGCAGGGAAATATTCTGGGGATCCTGATGACAAAGGCATTCAAACAACGA
TAGATGCTAGGCATTTTGCTATCTCAGCCAAGATACCGGAGTTCAGTAACAAGGGCCGAA
CATTGGTGGTCCAGTACTCCATAAAGTTTGAGAAGGAAATTGAGTGTGGCGGCGGCTATA
TTAAGCTAATGTCTGG

Homology of Contig U35_43273 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi2g57537.1	426	1e-52
Arabidopsis v10	None