barSeed - Barley Seed Development Database

Probe ABC02747

Source Contig ABC02747

barSeed

Links

Affymetrix Source Sequence (1628 bp)

>ABC02747 1628
CAGCCACCACCTACTCTTCGTCTCCGGCGATGTGTAGCAGCCGCCGGCGGGGCGACCGCC
AGCTCCAGCTCCTGCACCGCCTCCTCGCGCTCTCCTCGCTGCTCCTGCTCGCCTCCGGGG
AGGTCATCTTCGAGGAGCGGTTCGAAGATGGTTGGGAGACACGTTGGGTGAAATCCGATT
GGAAAAGGAGCGAAGGGAAAGCCGGTACATTCAAGCACACGGCAGGGAAATATTCTGGGG
ATCCTGATGACAAAGGCATTCAAACAACGATAGATGCTAGGCATTTTGCCATCTCAGCCA
AGATACCGGAGTTCAGTAACAAGGGCCGAACATTGGTGGTCCAGTACTCCATAAAGTTTG
AGCAGGAAATTGAATGTGGCGGCGGCTATATTAAGCTAATGTCTGGTTATGTCAATCAGA
AGAAATATAGTGGAGACACTCCATACAGCTTGATGTTTGGGCCAGATATATGCGGGACTC
AAACAAAGAAGCTGCATCTTATACTCTCTTACCAGGGGCAGAACTATCCTATCAAAAAAG
ATCTACAATGCGAAACCGACAGGCTCACGCATGTTTACACATTCATTCTTAGGCCCGATG
CATCTTATAGTTTACTTGTTGATAACCGTGAAAGAGAATCTGGGAGCATGTACACTGATT
GGGACATCTTGCCTCCTCGTAAAATCAAGGATGTTGGTGCCAAAAAGCCTAAGGATTGGG
ATGACAGAGAGTATATTGAGGATCCCGATGCGGTTAAACCTGAGGGCTATGATTCTATTC
CAAGAGAGATTCCTGACCCAAAGGATAAGAAGCCCGACACGTGGGACGATGATGATGATG
GCATATGGAAACCTAGGAGGATACCGAATCCAGCATACAAAGGACAATGGAAGCGCAAGA
AAATTAAGAACCCTAACTACAAGGGTAAATGGAAGATCCCATGGATTGATAATCCAGAGT
TTGAGGATGATCCAGATTTATATGTACTGAAACCTCTGAAGTATATTGGAATTGAAGTTT
GGCAGGTAAAAGCCGGTTCTGTTTTTGACAACATCCTCATTTGCGATGACCCGGAATATG
CAAAACAGGTTGCCGATGAAACGTGGGGTGCAAATAAGGAGGCTGAAAAGGAGGCTTTTG
AAGAAGCTGAAAAGGAGAGGAAAGCTAGAGAAGATAAGGAAGCTCAACAAGCAAGGGAGG
AAGGAGAGCGACGGAGGAGAGAGAGGGGTGATCGACACCGTGGCAGGGACCACTACAAGG
ACAGATACAAAAGACGCAACAGGGATCACTGGGATGACTACCATGATGAGCTTTGAGGCC
CCAAAAATCTTCCATTATTCGAAGGAGAAGCTGGGATTTGACATGAACATTGCGTTATAG
TTGCTGCCAATAATTGAAGTGTTCCTTGTCTCGTGTGAGGGAAACTGATTGAATTGACCA
CGAAGATCATTCCTATGTGACAGCAGGGCAGACAATTCCACCTATCCTCAAAAGTCAAAA
ACTTGGCCTTGGCCCTGAAATCTGATGTTGTGAGTGTAATGTACATGGTCAGCGATGTGC
TTCCTTTTGTAAACAGCTGTTGCTAATACAAATAAAGAGATTTTCAAGCATAAAAAAAAA
AAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK248906.1	1621	0.0	13 - 1621	100	1609 / 1609	CUST_32650_PI390587928 CUST_18839_PI390587928	ABC02747 ABC34622 ABC49879
MLOC_31971.1	897	0.0	1 - 742	99	740 / 743	CUST_18839_PI390587928	ABC02747 ABC49879
MLOC_31971.2	580	0.0	1 - 476	99	475 / 477	None	ABC02747 ABC49879
MLOC_74541.1	612	0.0	163 - 610	99	446 / 448	CUST_32650_PI390587928	ABC02747 ABC34622
MLOC_31970.1	433	0.0	1 - 432	99	431 / 433	None	ABC02747 ABC49879
MLOC_31971.4	416	0.0	1 - 414	99	413 / 414	CUST_18839_PI390587928	ABC02747 ABC49879
MLOC_31971.3	413	0.0	6 - 412	100	407 / 407	CUST_18839_PI390587928	ABC02747 ABC49879
MLOC_31971.5	324	4e-169	1 - 323	100	323 / 323	CUST_18839_PI390587928	ABC02747
MLOC_50010.1	515	3e-146	1 - 300	98	294 / 300	CUST_22087_PI390587928	ABC02747 ABC34622
MLOC_50010.2	565	8e-127	112 - 373	98	257 / 262	CUST_22087_PI390587928	ABC02747 ABC34622
MLOC_47339.1	260	6e-123	1 - 257	98	253 / 259	None	ABC02747
MLOC_32109.3	290	4e-100	68 - 290	96	215 / 223	CUST_32650_PI390587928 CUST_22106_PI390587928	ABC02747 ABC34622
MLOC_32109.1	264	1e-99	42 - 263	96	214 / 222	CUST_32650_PI390587928 CUST_22106_PI390587928	ABC02747 ABC34622
MLOC_48158.1	198	5e-94	3 - 196	99	192 / 194	None	ABC02747
MLOC_56781.1	278	1e-89	73 - 267	97	190 / 195	CUST_22106_PI390587928 CUST_32650_PI390587928	ABC02747 ABC34622
MLOC_32109.2	286	1e-85	11 - 204	96	187 / 194	CUST_32650_PI390587928 CUST_22106_PI390587928	ABC02747 ABC34622
MLOC_31680.2	708	2e-72	1 - 161	98	157 / 161	CUST_32650_PI390587928	ABC02747 ABC34622
MLOC_31680.1	571	2e-72	1 - 161	98	157 / 161	CUST_32650_PI390587928	ABC02747 ABC34622
MLOC_49352.1	154	2e-62	13 - 149	99	135 / 137	None	ABC02747