barSeed - Barley Seed Development Database

Probe CUST_32624_PI390587928

Source Contig U35_43820

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_32624_PI390587928	Hv_44K_v2	ATGCAGACGGTGAACCGGAAGCTGACCGCGATGAACAAGCTGCTCATGGAGGAGAATGAC	428	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_58644.3	3085	2e-24	2485 - 2544	100	60 / 60	minus	ABC13590 ABC18488
MLOC	MLOC_58644.2	3067	2e-24	2533 - 2592	100	60 / 60	minus	ABC13590 ABC18488
MLOC	MLOC_58644.1	3175	2e-24	2450 - 2509	100	60 / 60	minus	ABC13590 ABC18488
JLOC1	JLOC1_38121.1	3313	8e-25	541 - 600	100	60 / 60	plus
Harvest21	ABC40937	496	3e-25	429 - 488	100	60 / 60	plus
Harvest35	U35_43820	496	3e-25	429 - 488	100	60 / 60	plus

Contig Sequence (496 bp)

>U35_43820 496 Hv_44K_v2
AACCGGAAAGCGAGCGGCATGGCGACCCGCAGCGGAGCACGCCTCCCCGCCCCCTCCTCC
TCCTCTCCCTCTCGCAGGCCATGACGCGCCACCGCCCTTGGCCTCCTCACCCCCATCATC
CTCCTCCTCCCCATCCTCTTCGCGTAGCAGCACCAGCAGCGGCGACAGACAGCGGCGCCG
GCAAGATGGCGAGGCTCTCCCCTGGGGCGGCGGCGCCGCAGGTGGACACGGGCAAGTACG
TCCGCTACACGCCGGAGCAGGTGGAGGCGCTCGAGCGCGTCTACAACGAGTGCCCCAAGC
CCAGCTCCCTCCGCCGCCAGCAGATCATCCGGGACTGCCCCATCCTCTGCAACATCGAGC
CCAAGCAGATCAAGGTCTGGTTCCAGAACCGAAGGTGCCGGGAGAAGCAGCGCAAGGAGT
CCTCCCGCATGCAGACGGTGAACCGGAAGCTGACCGCGATGAACAAGCTGCTCATGGAGG
AGAATGACCGGCTGCA

Homology of Contig U35_43820 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g43930.2	860	1e-56	protein\|START domain containing protein, expressed
Brachypodium v1_2	Bradi4g01887.1	850	1e-62
Arabidopsis v10	AT1G30490.1	841	4e-51	\| Symbols: PHV, ATHB9 \| Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein \| chr1:10796328-10800744 REVERSE LENGTH=841