barSeed - Barley Seed Development Database

Probe CUST_32603_PI390587928

Source Contig U35_17560

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_32603_PI390587928	Hv_44K_v2	AACTCAAATACCAATGCTGCGATGGTGGATGCAATAATAATTTAGGTGGACGAGAAAAAA	595	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_36443.1	1406	3e-22	1313 - 1368	100	56 / 56	plus	ABC00697 ABC00768 ABC38927
MLOC	AK354185	1724	3e-21	1671 - 1724	100	54 / 54	plus	ABC00697 ABC00768 ABC38927
JLOC1	JLOC1_23462.1	1507	1e-22	1315 - 1370	100	56 / 56	plus
Harvest21	ABC00768	708	5e-23	652 - 707	100	56 / 56	plus	ABC00768
Harvest35	U35_17560	666	3e-25	596 - 655	100	60 / 60	plus

Contig Sequence (666 bp)

>U35_17560 666 Hv_44K_v2
GAATTCGGCACAGGGAGGAGTTGGCCCGACAGAACCGCGGAGGCTTGTCCCCGGCGAGTC
GGAAGATGGTTCCCCTGCTGTTCCAGGGAGGGATTACTTGGGTGGCGATCTTGCTGTTTC
TGCCTTTGCTGACGTTTCCTTTGATCTGCCTCTGAAGCTGTTTAGAGACGCTGGAATACA
CGGTCATGCGTTTCTCACCGCTGGGAATCTTGCGAAGTTGTCGGAGGGCCAGTACAAGAA
CTTCTCCCTCGATGAATTCCGTCGTTCATTCAGGAGTACTGCTGGCGTAGGCATTATCTT
GCCGACCAAGCTTTTCCGTGTGGAGGTGAACTACTGTTACATTCTGAAGCAATCTCGGCA
CGACAGTGGAAAGACGGGAATTCAGTTCAGCTTCTCCTCGCCCTCGTAGAGACCTGCTAC
CAAGCACTGGACGTCGCACCATCCCTTTTGCGTTGTGGACCGCTTCGCCTCCTCCCATTT
TGTTCCTTTCTTTCTCTGTTCGCTAGGGTACTTGCGCTTCGTTGACAAGAGGAGCCTGTA
AGGGTTCTGTTCCCTTCTCTTTAACACTAATGGTGTGTCACGGAGGTGCCTGTGTAACTC
AAATACCAATGCTGCGATGGTGGATGCAATAATAATTTAGGTGGACGAGAAAAAAAAAAA
AAAAAA

Homology of Contig U35_17560 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g39390.1	521	5e-74	protein\|outer membrane protein, OMP85 family protein, expressed
Brachypodium v1_2	Bradi2g22630.1	527	1e-70
Arabidopsis v10	None