barSeed - Barley Seed Development Database

Probe CUST_32601_PI390587928

Source Contig U35_17561

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_32601_PI390587928	Hv_44K_v2	TTATGAACTCGTCTACACCTGTGACTGATAGATTTAACCTTGGAGGCCACTCTTCTCCAG	1138	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK354185	1724	2e-24	985 - 1044	100	60 / 60	plus	ABC00697 ABC00768 ABC38927
MLOC	MLOC_36443.1	1406	2e-24	627 - 686	100	60 / 60	plus	ABC00697 ABC00768 ABC38927
JLOC1	JLOC1_23462.1	1507	8e-25	629 - 688	100	60 / 60	plus
Harvest21	ABC00697	1766	3e-25	1121 - 1180	100	60 / 60	plus	ABC00697
Harvest35	U35_17561	1225	3e-25	1139 - 1198	100	60 / 60	plus

Contig Sequence (1225 bp)

>U35_17561 1225 Hv_44K_v2
CATCTGAAAAAACAAGTGAAAGCTCGGAAGGCTCTCCTCTTCCCCCAAACCCCAACCATG
GCCGACGCCGCCGACCCCGCCGCCGGCCAGAACCCTAAGGTCGCCGGGAACCACGTGCCC
GAGCCCTGGGCTGGCGCCGATGGAGAAGTCGCCGAGGAGGAGTTCGAGTACGAGGACGAG
GAGGAGGAAGAGCTGGACGAGCCGGCGGCCGCAGCCCTCGAGCGGGAGAAGGTGCAGTCC
GTGTTCCGGAGGCTCAGCTCGGACCCCGTGGGGATCCGCGTCCACGACGTCATCATCAGG
GGCAACGCCAAGACGCGGGAGGAGCTCATCGAGGCGGAGGTCGCCGACCTCATCCGCTCC
GCCACCACCGTGCAGGACCTGCTGAGCGCCGCGGCCGAGGCCAGCGCGCGGCTCCGCGGG
CTCGACGTGTTCGAGGCCGTCAACATCACGCTCGATGCCGGCCCGCCCGAGCTGCCCGGC
ACCACCAACGTCGTCATTGAGGTTGTCGAGCCCTCCATCCCCATCAGCGGTAACGCCGGC
GTCTACTCAAAGCCCGAGGCAAAAGCGTGGTCACTGGAAGGGGCCGTTAAGTGGAAGAAT
TTGGCTGGCTATGCAGACATCTGGGATGCTTCGGTTGCATATGGTTGGGACCAAACAACA
GAGGTTGGCGTTGGAGTCTCACTGCCAAGATTTAAATCAATACCAACACCCTTGATGGCT
CGGGCTTCATTGTTGTCACAAGATTGGCTGAAGTTCTCATCATACAAGGAGCGCCTACTT
GGTCTTTCATTTGGTTTGCTTTCAACCAGGCACCATGATTTATCTTACAACCTTACATGG
CGTACCTTAACTGATCCATCACGCCTCGCGTCAACATCCATAAGAAGGCAGTTAGGGCAT
AACCTTCTATCTGCATTGAAATATACATACAAGATTGATGAAAGGGATTCACATATCAGG
CCAACAAAAGGATATGCATTTCTCTCAACCTCTCAAGTTGGTGGTCTTTGGGACAACAAA
GGATTGAAATTTTTTCGCCAGGAGTTTGATGTTCGTGCTGCTGTGCCTTTTGGATTCTGG
AATGCTGCTCTCAATGTTGGTGTAGGAGCGGGTGTTATTCTACCACTGTCAAGGGGATTT
ATGAACTCGTCTACACCTGTGACTGATAGATTTAACCTTGGAGGCCACTCTTCTCCAGTT
TGCAGCCTGGGTGGAATATCATCCC

Homology of Contig U35_17561 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g39390.1	521	1e-178	protein\|outer membrane protein, OMP85 family protein, expressed
Brachypodium v1_2	Bradi2g22630.1	527	0.0
Arabidopsis v10	AT5G05520.1	524	2e-125	Outer membrane OMP85 family protein \| chr5:1632912-1635104 FORWARD LENGTH=524