barSeed - Barley Seed Development Database

Probe CUST_325_PI390587928

Source Contig U35_20040

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_325_PI390587928	Hv_44K_v2	CTATCTGAAATTATATCTTGCGTAAGCGTGTGCAAAATTATCATGGAGTTTAGAAATCCC	718	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK253078.1	2499	2e-23	2442 - 2499	100	58 / 58	plus	ABC13445
MLOC	MLOC_64864.6	1805	2e-23	1679 - 1736	100	58 / 58	plus	ABC13445
MLOC	MLOC_64864.5	3000	2e-23	2937 - 2994	100	58 / 58	plus	ABC13445
MLOC	MLOC_64864.4	3023	2e-23	2963 - 3020	100	58 / 58	plus	ABC13445
MLOC	MLOC_64864.1	2599	2e-23	2521 - 2578	100	58 / 58	plus	ABC13445
JLOC1	JLOC1_42631.3	2600	1e-23	2460 - 2517	100	58 / 58	plus
JLOC1	JLOC1_42631.2	2686	1e-23	2546 - 2603	100	58 / 58	plus
JLOC1	JLOC1_42631.1	2743	1e-23	2603 - 2660	100	58 / 58	plus
Harvest35	U35_20040	795	3e-25	719 - 778	100	60 / 60	plus

Contig Sequence (795 bp)

>U35_20040 795 Hv_44K_v2
GCACGAGGGACGGGTTAGATATAATCATATTTTTTCGTCCTCTTTGTTCAGAAACAAAAA
AATTATGTTCATGCTGTTGCCTACACGTGAGCTCAAGTCAGTCTCTGTCAAAAAATTATT
TCTACTATTCCCCGTTTTAAGTTATTACCTTTCTGTGTTGCAGATGCTTGATGATTTTGT
TGATGTCACGAATGATGAGAAACTTATTATGCATATGTGGAATTCATTTGTTCGGAAACA
AAGGGTGCTAGCTGATGGTCATATTCCTTGGGCCTGTGAGGCATTCTCCCGGCTTCATGG
AAAACATCTTGTACAGAATCCTCCTCTACTATGGAGCTGGCGTTTCCTTATGATTAAACT
GTGGAACCACAGTCTATTAGATGCCCGTGCCATGAATGTCTGCGGCACAATTCTTCAAGG
CTACCAAAATGAAAGCTCGGACCCCAAGAATATATGAGTTGAGCATAGTGCGCTAATTAT
AATTTAAATCAAGTGGGTATTTGGAGGAGGCCGTAGGAGCAGGTTAAAGAGGTGAAAGCT
GCACCTAAGGCCATGGAGGACCATTCTCAATTCTATTTACCGACCGGTCGTATTTACAAG
GACTGTTGTTCGTCGTGTTCTGTTCCATGTATAAGCGCCTTTAGTGTCGCATAACTTGTC
GTATGGTCTGCAAACTTGAATCAGTGTTGTCAAGTTCTCTTCTTTGCTGTAATGAAACCT
ATCTGAAATTATATCTTGCGTAAGCGTGTGCAAAATTATCATGGAGTTTAGAAATCCCAA
AAAAAAAAAAAAAAA

Homology of Contig U35_20040 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g13630.1	605	2e-51	protein\|ZOS9-03 - C2H2 zinc finger protein, expressed
Brachypodium v1_2	None
Arabidopsis v10	None