barSeed - Barley Seed Development Database

Probe CUST_32549_PI390587928

Source Contig U35_29550

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_32549_PI390587928	Hv_44K_v2	GCGCACTTCTTGGAATATTTATTATTGTATCGCCATAAGAATTGGTCATGAATGAAATGG	407	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_38791.1	1315	2e-24	3 - 62	100	60 / 60	minus	ABC44874
JLOC1	JLOC1_25254.1	1302	8e-25	1217 - 1276	100	60 / 60	plus
Harvest21	ABC28874	467	3e-25	408 - 467	100	60 / 60	plus
Harvest35	U35_29550	467	3e-25	408 - 467	100	60 / 60	plus

Contig Sequence (467 bp)

>U35_29550 467 Hv_44K_v2
GTGGTACAACGAGTTCTCTCAGAAGCACAACCAACTATTGAAGAAGGAGGTTGGCCGGCT
CAAATCTCGCAACCCTGGCGTGAAGATCATCTACGCCGACTACTATGGCGCCGCCATGGA
GTTTGTCAGGAACCCCAAGAGGAATGGCATCAATGACCCCCTGGTGGCGTGTTGTGGTGG
CAACGGCCCCTATGGCACCGGCCATGATTGCGACCTCAATGCGAAGGTTTGCCGCGACCC
ATCCAGGTTCGCCAACTGGGACCAGGTTCACATGACAGAGAAGGCCTACAGTGTCATCGC
CCATGGGGTGCTCAACGGCCCGTATGCGGACATCCCGTTGCTCCACGCTTGCTAGGAGAA
TTTCCTTTGAGACCTGAAGAAATGTTGCTGCTACCAAGATCTGTTACGCGCACTTCTTGG
AATATTTATTATTGTATCGCCATAAGAATTGGTCATGAATGAAATGG

Homology of Contig U35_29550 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g46220.1	371	2e-53	protein\|GDSL-like lipase/acylhydrolase, putative, expressed
Brachypodium v1_2	Bradi2g45230.1	368	1e-62
Arabidopsis v10	None