- Probe CUST_32543_PI390587928
- Source Contig U35_29553
Probe Details
Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
---|---|---|---|---|
CUST_32543_PI390587928 | Hv_44K_v2 | TGCGAAAACAATGGACATTGATGTCCAGTAATAAAATTTCGTGAGACATGCATGCAAAAA | 53 | GeneList: lightcyan1 MasterList: None |
Probe Values
3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
---|---|---|---|---|---|---|
Normalized | 0.072 | 0.236 | 0.884 | 1.497 | 1.189 | 1.890 |
Raw | 26.817 | 147.475 | 449.477 | 1032.997 | 340.292 | 579.236 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
---|---|---|---|---|---|---|---|---|
MLOC | MLOC_72752.2 | 849 | 7e-23 | 515 - 571 | 100 | 57 / 57 | minus | ABC26218 |
Harvest21 | ABC28878 | 113 | 3e-25 | 54 - 113 | 100 | 60 / 60 | plus | |
Harvest35 | U35_29553 | 113 | 3e-25 | 54 - 113 | 100 | 60 / 60 | plus |
Contig Sequence (113 bp)
>U35_29553 113 Hv_44K_v2 TTCACAGTCACTGCATTTGCGTCGTCTGTCACTAGAGCTGCACTCTAGCACCATGCGAAA ACAATGGACATTGATGTCCAGTAATAAAATTTCGTGAGACATGCATGCAAAAA
Homology of Contig U35_29553 to Model Species (E-value threshold 1e-50)
Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
---|---|---|---|---|
Rice v7 | None | |||
Brachypodium v1_2 | None | |||
Arabidopsis v10 | None |