barSeed - Barley Seed Development Database

Probe CUST_32495_PI390587928

Source Contig U35_4842

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_32495_PI390587928	Hv_44K_v2	GATATATTCCGCCTATGTTTGAAGTAAATAAAAAACCACTTTGTGGCTTTGGTACCGAAA	541	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK366322	2002	3e-22	1947 - 2002	100	56 / 56	plus	ABC04006 ABC41313
MLOC	MLOC_16363.1	1417	3e-22	1335 - 1390	100	56 / 56	plus	ABC04006
JLOC1	JLOC1_11263.1	1672	1e-22	1335 - 1390	100	56 / 56	plus
Harvest21	ABC04006	2006	1e-23	1931 - 1990	98	59 / 60	plus	ABC04006
Harvest35	U35_4842	615	3e-25	542 - 601	100	60 / 60	plus
Harvest35	U35_15913	2006	1e-23	1931 - 1990	98	59 / 60	plus

Contig Sequence (615 bp)

>U35_4842 615 Hv_44K_v2
CTCCATCTCACCCTGCTCCAAGCCTCTCTCTCGCACGCATCCCATCCCATCCCACCCAAC
CCCACCCGACCGCCCCGAGTCGAGTCCAATCGATGGAGCAGCAGCCTGTGGCGGCGGCGC
CGGCGGCCGAGCCGGAGGTACCGGCGGGGCTTGGGCTGACGGCCGCGGAGTACGCGCAGC
TGCTGCCCACGGTGGAGGCGTACCACCGGTACGCCGTGGGGCCAGGCCAATGCTCCTCCC
TCGTCGCGCAGCGTATCGAGGCGCCGCCAGCCGCGGTCTGGGCCATCGTCCGCCGCTTCG
ACTGCCCCCAGGTGTACAAGCACTTCAGAGGAGCTCTGCTGGTGAGCAGAGGTGGGGGCT
GTTCATTGGGACCAAGTGATGGCCCAGATCTGTGGGTGTCTGCAAGCAAATAAAGTGGCT
TCATTTCATGTGGCCTTTCTCATAATTTGGTTTTGCAATTGATATTTACCTATCCTATTT
CTCGGTGATTCGGGAAAGCTGGTTATCACGGTCCTGTATTGATTCGATTATGCGTGATAC
TGATATATTCCGCCTATGTTTGAAGTAAATAAAAAACCACTTTGTGGCTTTGGTACCGAA
AAAAAAAAAAAAAAA

Homology of Contig U35_4842 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None