barSeed - Barley Seed Development Database

Probe ABC04006

Source Contig ABC04006

barSeed

Links

Affymetrix Source Sequence (2006 bp)

>ABC04006 2006
GGCCACTGCTCGTTCACACCCGCTCCACTCGTCCGCGCTCCTCCCCCTCCCCGCAGCCCC
GACGTGATCCCGTCGTGGATGCAGCCGCGTGGGAGGTCGTTCAACCGCCGCTCCCGCAGC
TTCTCCCGCGCCCGCCTCGCCGTCGAGGGATCCTAATCTCGCCCGCCTCCCGTAACGAAC
AACCATCCCATCTGATAAATTCACGCGGAACAGCCCGCCGTTAACAGCCACGGGAACTAA
GATGGACGCCGCCGCCGCCGCCGCCGCTGCCGCCGACGCAGTCGTTGCCAACGGGGTGCT
GGCGAAGCTGGAGGAGGAGAGGGAGGCGCAGAAGAGGTACTGGGAGGAGCACTCCAGGGA
CCTCACTGTTGAGGCCATGATGCTCGACTCCCGTGCCGCCGATCTGGACAAGGAGGAGCG
CCCCGAGATACTGTCTTTACTTCCTTCATATGAAGGAAAATCAGTGCTGGAGCTTGGCGC
GGGAATAGGTCGCTTTACTGGAGAACTGGCTAAGACAGCTGGGCATGTTCTTGCAATGGA
TTTCATTGAAAGTGTGATTAAAAAGAATGAAAGCATAAATGGCCATTACGAAAATGCATC
CTTCATGTGTGCTGATGTTACATCTCCAGACCTGGTGATTGAGGACAACTCGATTGATCT
CATATTTTCAAACTGGCTACTGATGTATCTTTCAGACGAGGAGGTCGAGAAGCTTGTAGA
AAGAATGGTTAAATGGCTCAAAGTTGGTGGCCATATCTTCTTTAGAGAATCATGCTTCCA
TCAATCTGGAGACTCAAAAAGGAAAGTGAATCCGACACATTATCGTGAACCAAGGTTTTA
CACTAAGGTATTTAAAGAGGGCCATGCCATTGATCAGAGTGGGAGCTCCTCTGAACTTTC
TCTGCTTACTTGCAAGTGTGTTGGAGCTTATGTGAAGAACAAGAAGAATCAAAACCAGAT
ATGTTGGCTATGGCAAAAAGTCAACTCAACAGAAGATCGGGGGTTTCAAAGATTTTTGGA
TAATGTGCAGTACAAAACCAGTGGAATATTACGCTATGAGCGTGTTTTTGGGCAAGGTTT
TGTGAGCACTGGTGGAATTGAGACTACAAAAGAATTTGTGGACTTGCTGGATCTTAAACC
TGGGCAGAAGGTGCTTGATGTTGGATGTGGAATCGGGGGTGGTGATTTTTTTATGGCCGA
AAACTATGATGTTCATGTTGTTGGCATTGATCTTTCCATAAACATGGTTTCATTTGCACT
CGAGCATGCTATTGGACGCAAGTGCGCAGTCGAGTTTGAAGTTGCTGATTGCACCACGAA
GACATACCCAGACAATACATTTGATGTTATCTACAGCCGTGACACCATCCTTCACATACA
AGATAAACCCGCTTTGTTTAGAAGTTTCTTCAAATGGCTAAAACCTGGTGGTAAGGTCCT
AATCAGCGATTACTGTAGGAGTCCAGGAAAACCATCTGAAGAGTTTGCGTCATACATTAA
GCAGAGGGGTTACGACCTTCATGATGTAGAGACTTATGGACAGATGCTAGAGAATGCTGG
TTTCCATGATGTCATTGCCGAAGACCGCAGTGATCAGTTCCTGAAAGTTTTACAGAGGGA
GCTAGCCGAAGTTGAAAAGAACAAAGATGATTTTCTAGCCGACTTTGGTCAGGAGGACTA
TGACGATATTGTGACTGGGTGGAACGCGAAACTTCAGAGGAGCTCTGCTGGTGAGCAGAG
GTGGGGGCTGTTCATTGGGACCAAGTGATGGCCCAGATCTGTGGGTGTCTGCAAGCAAAT
AAAGTGGCTTCATTTCATGTGGCCTTTTTCATAATTTGGTTTTGCAATTGATATTTACCT
ATCCTATTTCTCGGTGATTCGGGAAAGCTGGTTATCACGGTCCTGTATTGATTCGATTAT
GCGTGATACTGATATATTCCGCCTATGTTTGAAGTAAATAAAAAACCACTTTGTGGCTTT
GGTACCAAAAAAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK366322	2002	0.0	18 - 2002	99	1982 / 1985	CUST_25204_PI390587928 CUST_1593_PI390587928 CUST_32495_PI390587928 CUST_25203_PI390587928	ABC04006 ABC41313
MLOC_16363.1	1417	0.0	250 - 1391	99	1141 / 1142	CUST_25204_PI390587928 CUST_1593_PI390587928 CUST_32495_PI390587928	ABC04006
MLOC_16363.2	1416	0.0	1032 - 1416	99	384 / 385	None	ABC04006
MLOC_77563.1	556	3e-152	108 - 400	100	293 / 293	None	ABC04006
MLOC_28803.2	251	6e-129	1 - 251	100	251 / 251	CUST_25203_PI390587928	ABC04006
MLOC_28803.1	235	3e-112	1 - 235	98	231 / 235	CUST_25203_PI390587928	ABC04006
MLOC_27545.2	432	6e-109	3 - 223	99	219 / 221	CUST_25205_PI390587928 CUST_25203_PI390587928	ABC04006 ABC41313
MLOC_27545.1	469	7e-108	78 - 296	99	217 / 219	CUST_25205_PI390587928 CUST_25203_PI390587928	ABC04006
MLOC_80186.2	1485	5e-100	1254 - 1485	95	221 / 232	None	ABC04006
MLOC_80186.3	673	2e-99	443 - 673	95	220 / 231	None	ABC04006
MLOC_8530.1	1538	6e-99	1051 - 1278	96	218 / 228	CUST_25205_PI390587928 CUST_25203_PI390587928	ABC04006
MLOC_30428.2	160	2e-69	4 - 159	97	152 / 156	None	ABC04006
MLOC_53069.1	362	6e-69	28 - 176	99	147 / 149	None	ABC04006
MLOC_25473.2	158	4e-66	3 - 158	96	150 / 156	None	ABC04006
MLOC_30428.1	161	8e-58	4 - 135	98	129 / 132	None	ABC04006
MLOC_25473.1	138	2e-53	12 - 138	97	123 / 127	None	ABC04006