barSeed - Barley Seed Development Database

Probe CUST_3244_PI390587928

Source Contig U35_22918

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3244_PI390587928	Hv_44K_v2	ATGCAGCATTTCCTATCCCTGTCCAAGCTGCCGCCGACGACTTCCTCCGGTGCATGTCGG	108	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK356380	2072	2e-24	107 - 166	100	60 / 60	plus	ABC12286
MLOC	MLOC_35605.1	477	2e-24	244 - 303	100	60 / 60	plus	None
JLOC1	JLOC1_22962.1	466	8e-25	249 - 308	100	60 / 60	plus
Harvest35	U35_22918	556	3e-25	109 - 168	100	60 / 60	plus

Contig Sequence (556 bp)

>U35_22918 556 Hv_44K_v2
ATCAGTCGCCGTTCACGAGCTCAAGCATGCAGAGCTCGATGCCCTGCAGTTCGCGAACCA
TGGCGCTCGCAATGCTGCTCGTCTCCGCCCTCTTCTTCGTCGCTTCCCATGCAGCATTTC
CTATCCCTGTCCAAGCTGCCGCCGACGACTTCCTCCGGTGCATGTCGGCGTCCGTCCCCG
GCAATCTTCTCTTCCCGCGGAGCTCGCCGTCGTTCGCGTCCGTCCTGGCGTCGTCCGTCC
GGAACCCGCGGTTCCTCGGGCCGGCCGTGGTGCGGCCGCTCTGCATCGTCACGGCGACCA
ACGCATCCCACGTCCAGGCCGCCGTCGTCTGCGGCCGCCGGCACGGCGTGCGCCTCCGCG
TGCGCAGCGGCGGGCACGACTACGAGGGCCTCTCGTTCCGGTCCGCGCGGCCCGAGGAGT
TCGCCGTCGTCGACCTCGCCGCCCTCCGCTCCGTGCGCGTCACCGTGAGGGAGCCGGCCG
AGGCGTGGGTCGAGTCCGGCGCCACGCTCGGGGAGCTGTACCACGCCATCGGGAAGGCGA
CAAACCTGCACGCGTT

Homology of Contig U35_22918 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g35650.1	527	4e-51	protein\|reticuline oxidase-like protein precursor, putative, expressed
Brachypodium v1_2	Bradi1g38250.1	522	2e-52
Arabidopsis v10	None