barSeed - Barley Seed Development Database

Probe CUST_323_PI390587928

Source Contig U35_20042

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_323_PI390587928	Hv_44K_v2	GAATGATTGAAAATGAACAGTCTTCTCATTGATGAATGTTGGGGTATTTATACCCAGTAC	562	GeneList: darkolivegreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.219	0.304	0.836	1.840	1.446	1.712
Raw	75.660	167.681	405.652	1407.973	382.098	492.707

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK366617	774	2e-24	598 - 657	100	60 / 60	plus	ABC09498 ABC14039
Harvest21	ABC14038	656	3e-25	569 - 628	100	60 / 60	plus
Harvest21	ABC14039	673	1e-24	599 - 657	100	59 / 59	plus	ABC14039
Harvest35	U35_20042	650	3e-25	563 - 622	100	60 / 60	plus
Harvest35	U35_20043	673	1e-24	599 - 657	100	59 / 59	plus

Contig Sequence (650 bp)

>U35_20042 650 Hv_44K_v2
CGCCACGGCCAGTCGAGCGCCGACGCTAGAAGGAGGAGCCGCGCTGGAGGGCTTCTTTCC
TTCACGCGCCGGAAGGCGTCACCATGCCGTGCACCGGCCGTTGGCCGCTGCCACCACTGT
GCGTTAGGCGGCGAGCGCCGCGCTTGGAGCAGCCTGGCCGAAGGATGCAGCCACGGTGTA
GCCGTCCCGCGAGGAACTTGGCCGAGGAGGCGTCTTCCGGGCCATGGGTCGTCATTGGAG
CTTGCCTTGGACAACATTGATATGCCGTCCTGGAGGGATGCATGATCTTCTTTGCCGTGA
AGATGGAGGGGCTGTTGAGACTGCCGGAGATGCTGCCTCGATTCTTGCCCGGATGGTACC
ATTCATGGCTTGACGCTGAAGATTCCGTAGCCGGATGACCGCCATGCTCCGGTCGTATTG
CCACCAGATGCGAGAGATAGCCTCGACGCCTCGCTGCTGTTAGGCTGCCTCCCCGTCGCT
TTCTTCTTGTGTTGGGTTGGCCAAAACGCTCTCGGATACGAGCGTGCTGATAACGTGTTA
AAAGTAAACGAGAGAGAGAAGCGAATGATTGAAAATGAACAGTCTTCTCATTGATGAATG
TTGGGGTATTTATACCCAGTACAAAAAAAAAACAAAAAAAAAAAAAAAAA

Homology of Contig U35_20042 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None