barSeed - Barley Seed Development Database

Probe CUST_322_PI390587928

Source Contig U35_20043

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_322_PI390587928	Hv_44K_v2	GAGCGAATGATTGAAAATGAACAGTCTTCTCATTGATGAATGTTGGGGTATTTATACCCA	594	GeneList: darkolivegreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.211	0.304	0.810	1.772	1.495	1.828
Raw	66.674	146.941	351.295	1211.315	352.847	471.743

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK366617	774	6e-24	595 - 653	100	59 / 59	plus	ABC09498 ABC14039
Harvest21	ABC14039	673	3e-25	595 - 654	100	60 / 60	plus	ABC14039
Harvest21	ABC14038	656	1e-24	566 - 624	100	59 / 59	plus
Harvest35	U35_20043	673	3e-25	595 - 654	100	60 / 60	plus
Harvest35	U35_20042	650	1e-24	560 - 618	100	59 / 59	plus

Contig Sequence (673 bp)

>U35_20043 673 Hv_44K_v2
GCACGAGGGATTTATTCCCCAAATCCACCGTCGCCAAGGCCAGCCGAGCGCCGACGCTAG
AAGGAGGAGCCGCGCTGGAGGGCTTCTTTCCTTCACGCGCCGGAAGGCGTCACCATGCCG
TGCACCGGCCGTTGGCCGCTGCCACCGCTGTGCGTTAGGCGGCAAGCGCCGCGCTTGGAG
CAGCCTGGCCGAAGGATGCAGCCACGGTGTAGCCGTCCCGCGAGGAACTTAGCCGAGGAG
GCGTCTTCCGGGCCATGGGTCGTCATTGGAGCTTGCCTTGGACAACATTGATACGCCGTC
CTGGAGGGATGCATGATCTTCTTTGCCGTGAAGATGGAGGGGCTGTTGAGACCGCCGGAG
ATGCTGCCTCGATTCTTGCTCGGATGGTACCATTCATGGCTTGACGCTGAAGATTCCGTA
GCCGGACGACCGCCACGCTCCGGTCGTATTGCCACCAGATGCGAGAGATAGCCTCGACGC
CTCGCTGCTGTTAGGCTGCCTCCCCGTCGCTTTCTTCTTGTGTTGGGTTGGCCAAAACGC
TCTCGCATACGAGCGTGCTGATAACGTGTTAAAAGTAAAAGTAAAAGAGAGAGAGAGCGA
ATGATTGAAAATGAACAGTCTTCTCATTGATGAATGTTGGGGTATTTATACCCAGTAAAA
AAAAAAAAAAAAA

Homology of Contig U35_20043 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None