barSeed - Barley Seed Development Database

Probe CUST_32293_PI390587928

Source Contig U35_50549

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_32293_PI390587928	Hv_44K_v2	AATCCAGTTGGTTTTGACACGGATGCTGGAATGATATTTTGTTTGGCCTTTACACCAGTT	528	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_39596.1	701	2e-24	612 - 671	100	60 / 60	minus	ABC10591
JLOC1	JLOC1_25824.1	725	8e-25	224 - 283	100	60 / 60	plus
Harvest35	U35_50549	634	3e-25	529 - 588	100	60 / 60	plus

Contig Sequence (634 bp)

>U35_50549 634 Hv_44K_v2
CCCCACTCCACATCGGTGCCGCCAATTACCTGATCGATACGGAGCACCACCGTCGTCGAT
GAACGACTCCATTGGCGACCACCATCCTCCAGCGAACTCCTTCCCTTCTTTTGAGCTAGC
TTCCTCTCTAACCAGGTCCCCTCTCGGCAAGGTTCACCGAACACCAACCCGCGGGTCCGC
ATCCTCCATGTCCTCTACAACGAAGCAACAGTGTCGACCCTCTGCAAATCTTCCCATGGA
TCAACATCGCTGCCTTCTTCTCCCCTTCCTTTGTCAGGGCTATAGCTGCAAAGGCAACTC
TAGCCGGAATAATTGATTCAACTAGAGGTGATCCAATGGAAAAGCTGGTCACAACCTCTT
AGAAGAAATTCGCAAGAAGATCGAGAAGTGGCAAGTACTGCCTCCTGCAAAGCTTCCAAA
ACCACTTCATGTTCTAGATTCTGAACCTAAAAAGAAGAGAGGGGGTCGCCGCCTTCGAAA
AATGAAAGAAAGATATGTGGTGACTGATATGATGAAGTTTGCAAACTGAATCCAGTTGGT
TTTGACACGGATGCTGGAATGATATTTTGTTTGGCCTTTACACCAGTTCAGGAAATAGAG
CTGTCAAGCCCACATGCCCAGGGGGAACCTTCTT

Homology of Contig U35_50549 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None