barSeed - Barley Seed Development Database

Probe CUST_32288_PI390587928

Source Contig U35_48230

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_32288_PI390587928	Hv_44K_v2	GCACCGTTGTTGCTATTGCTATATGGTACTCTCTCCGTTCCTTTATACATATATATTTGT	57	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK356898	4090	2e-24	560 - 619	100	60 / 60	plus	ABC03111 ABC03112 ABC18956
JLOC1	JLOC1_41581.1	723	8e-25	50 - 109	100	60 / 60	minus
Harvest35	U35_48230	438	3e-25	58 - 117	100	60 / 60	minus

Contig Sequence (438 bp)

>U35_48230 438 Hv_44K_v2
TTTTTTTTTTTTTTTTTAAAAGAAATGCATCTTACATTGTGAAGTTTCATCAGAAAAACA
AATATATATGTATAAAGGAACGGAGAGAGTACCATATAGCAATAGCAACAACGGTGCTGA
AATGCAGAAGGAAAGTAAAAAATAGAACATGGATCGATGGAGCCCGCGAGTGCACCCATG
GACGTACGGACGCCGGGCAGGAAAAGTGGTTGTGTTGACGTCCATACATAGCGCAGGTCC
ATTCACTTTGTGCCTGTGCGACATCGGTTAATGGTTGTGCATCCATGGCCGGTGTACGGC
TGTCCCTTCGCTGGACAACCCGTCTTGCCGCAAGCTGGCTGGGCGCCATCCTGCACGCCT
TGCACGCTGATTTCACCAAGGACGCGGCGGTGCACGTGCACCTCCTGGTTCACCGCGAGC
TCCGGCGCCACGCCGTCT

Homology of Contig U35_48230 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None