barSeed - Barley Seed Development Database

Probe CUST_32230_PI390587928

Source Contig U35_23433

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_32230_PI390587928	Hv_44K_v2	ACATGTATGTTATCCCTATCAGATATTGGGGCTATATAAGTCGTCGATAAAGTTGCAACT	552	GeneList: red MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.380	1.748	1.537	0.762	0.230	0.224
Raw	908.892	1753.124	1360.490	1084.715	112.476	120.819

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_66849.4	534	7e-23	421 - 480	98	59 / 60	plus	ABC20681
JLOC1	JLOC1_44098.1	1183	4e-23	1114 - 1173	98	59 / 60	plus
Harvest21	ABC20681	636	3e-25	25 - 84	100	60 / 60	minus	ABC20681
Harvest35	U35_23433	636	3e-25	553 - 612	100	60 / 60	plus

Contig Sequence (636 bp)

>U35_23433 636 Hv_44K_v2
CAGGGTCATCGTACTCCAGCATATGCTCAATATCTGCTCAGTACTTTGCCAAAATGCGAG
AAGTCCTGATTGAAAGGAATGTTCCATCTGCATTGAACTCTGGATTCTTAACACCATGCC
GCGAAAGGTTGTTTTTAGCACTTGGATTCGAGCTGTTTGCTGTAAATGATGAGAAGTTCA
TGGACATGTTCGTGTCTCCCGGCGCAGTTGATTGTATCCAGAATGAGCGCCAGTCTCTGC
TGAAACGTCAAAAGATTTTGCTGTCCTGTTTAAGCGAGTTCAAGAACATCTCGCGGACGC
TGTGATGAAGATCTGTCCGGCGCTTCTTCCACTGGCATGTATTTCATGAGCTTCAGGGTA
TTCCCTACAATACAACATAGTTATTAATGGTTGTTTTATTGTTGTTGCGCATCCTTCTAA
GCCTCCATGCCCCTCAACGCAGGCTGTTCTTTGTATTCTCTGTCTCCATGCCCCTTAACG
CAGGCTGTTCTTTGTATTCTCTGTATGTCAAATCCCGTATTGACAATTTGTGTGCTACTT
GGCATTTGTTGAACATGTATGTTATCCCTATCAGATATTGGGGCTATATAAGTCGTCGAT
AAAGTTGCAACTTGGATTTTAAAAAAAAAAAAAAAA

Homology of Contig U35_23433 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None