barSeed - Barley Seed Development Database

Probe CUST_32221_PI390587928

Source Contig U35_35412

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_32221_PI390587928	Hv_44K_v2	CTAGCAATTTCTGGCTTCTCATTCATGTGATGTAGTATATTTATTGTTACGGACTTACAG	583	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK362801	2907	7e-23	2780 - 2839	98	59 / 60	plus	ABC13116
MLOC	AK372571	2592	7e-23	2498 - 2557	98	59 / 60	plus	ABC13116
MLOC	AK360637	3094	7e-23	2996 - 3055	98	59 / 60	plus	ABC13116 ABC21232
MLOC	MLOC_25092.1	707	7e-23	9 - 68	98	59 / 60	minus	ABC13116
JLOC1	JLOC1_17187.1	814	4e-23	647 - 706	98	59 / 60	plus
Harvest21	ABC44433	552	1e-23	35 - 94	98	59 / 60	minus
Harvest21	ABC13116	1151	1e-23	994 - 1053	98	59 / 60	plus	ABC13116
Harvest35	U35_35412	672	3e-25	584 - 643	100	60 / 60	plus
Harvest35	U35_20508	1151	1e-23	994 - 1053	98	59 / 60	plus

Contig Sequence (672 bp)

>U35_35412 672 Hv_44K_v2
GGGGACCACGAGTTGTAATTTTGAGTGGGTACGCCATTTGGAAGATGGATCGGTGAATTA
CATAGAAGGTGCAAAATAGCCTACATATTTAGTTACTGCTGATGATGTGGACTCTTTACT
AGCCATAGAGGTCCAGCCTCTAGACGACCGGAAAAGAAAGGGGGAGATTGTGAAGGTTTA
TGCTAATGAGCAGAGAAAAATTACATGTGATCCAGAAATGAAGGAGCTCATCAAGAAAAT
TCTTTCGGTTGGGCATGTGTCGTATGAAGTTCTACTACCTATCAATATCCCTTATGGCCA
TCCTACCGAGTTTTCGATACAGTCTGCTGACGGTGCCGAGTACAATCTCAAGCCTGGAGA
TAACTCCCCGTCACGGGACAACATCGTGCTGGTACTGCGACTCTTCAGAATGAAGAGCAA
AGGAAGGAAGAAAGGCATCTTCTTCAAGTAGAGTGGAGTCAATGAGAGTGTTGTTTGCTT
GCTTGTAGCTGGGTATTTATTCATTTGGTCGTGGTCGTACCGCGATTATTATTGGTTGTA
GACAGGAAAATCAAGGAGGATTACGTGGTAAGTAGGTAGCTAACTAGCAATTTCTGGCTT
CTCATTCATGTGATGTAGTATATTTATTGTTACGGACTTACAGGTTATATTGTATCTATC
ATCTCTCTGTTT

Homology of Contig U35_35412 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g01060.1	751	2e-78	protein\|expressed protein
Brachypodium v1_2	Bradi2g40100.1	778	2e-80
Arabidopsis v10	None