barSeed - Barley Seed Development Database

Probe ABC13116

Source Contig ABC13116

barSeed

Links

Affymetrix Source Sequence (1151 bp)

>ABC13116 1151
GCTTGTTAGGAGTGACGCATCAGAAAACCTGGAGGGAGCTGAAACCCAAGCTTACAAGAA
CCTCCTGCAGAGTGGGGTCCTGAAGGCGGACCTAGCTTGGCATCTGGCCCTGACGATGGC
AACTTGCCTTACCCTTATCTTCCTACTGTCCTTGAGGAGCCTAGCACTTCTTTCTCTGAA
GTTGCAGAGGATGACCCACTGCCAGCCATAGATGGGCTAAGAATCACAGGTGAAGCTTTT
CCTGGAAAAGAACTTCAAGCAAGTGGGTATTCCATCAACGGGACCACGAGTTGTAATTTT
GAGTGGGTACGCCATTTGGAAGATGGATCGGTGAATTACATAGAAGGTGCAAAACAGCCC
ACATATTTAGTTACTGCTGATGATGTGGACTCTTTACTAGCCATAGAGGTCCAACCTCTA
GATGACCGGAAAAGAAAGGGGGAGATTGTGAAGGTTTATGCTAATGAGCAGAGAAAAATT
ACATGTGATCCAGAAATGAAGGAGCTCATCAAGAAAATTCTTTCCGTTGGGCATGTGTCG
TATGAAGTTCTACTACCTGTTAGATTTATAGATATGTGGGAACCTGCGGTATTGGCCATA
AAGAGGGAAGGCTACAGCATCAAGTGTAATGGACAGCGTGGTGTCGTTATCACAGAGAAG
TTCCAGCAAGCTACAGCCATCAATATCCCTTATGGGCATCCTACCGAGTTTTCGATCCAG
TCTGCTGACGGTGCCGAGTACAATCTCAAGCCTGGAGAAAACTCCCCGTCACGGGATAGC
ATCGTGCTGATTCTGCGGCTCTTTAGAATGAAGGCTGTTGAGAAGAGCAAAGGAAGGAAG
AAAGGCATCTTCTTCAAGTAGAGTGGAGTCGATGAGAGTGTTGTTTGCTTGCTTGTAGCT
GGGTATTTATTTATTTGGCCGTGATCGTACCGCGATTATTATTGGTTGTAGACAGGGAAA
TCAAGGAGGATTAGGTGGTAAGTAGGTAGCTAACTAGCAATTTCTGGCTTCTCATTCATG
TGATGTATTATATTTATTGTTACGGACTTACAGTTTATATTGTATCTATCATCTCTCTGT
TTATCACTCTTCCATGTGTGTAAAGGAAGTAAGAAATATGCATATGGTTGAATTAAAAAA
AAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK362801	2907	0.0	1787 - 2907	99	1119 / 1121	CUST_30509_PI390587928 CUST_1963_PI390587928 CUST_32221_PI390587928	ABC13116
AK372571	2592	0.0	1505 - 2591	99	1084 / 1087	CUST_1963_PI390587928 CUST_32221_PI390587928 CUST_30509_PI390587928	ABC13116
AK360637	3094	0.0	2007 - 3094	98	1067 / 1093	CUST_32221_PI390587928	ABC13116 ABC21232
MLOC_25092.1	707	0.0	1 - 575	99	572 / 575	CUST_32221_PI390587928	ABC13116
MLOC_25092.2	749	0.0	1 - 468	99	465 / 468	None	ABC13116
MLOC_39867.1	608	0.0	181 - 608	97	416 / 428	None	ABC13116
MLOC_39867.2	682	6e-166	160 - 507	97	338 / 348	None	ABC13116
MLOC_48740.1	324	7e-161	6 - 313	100	308 / 308	None	ABC13116
MLOC_25092.3	652	7e-101	1 - 209	99	206 / 209	None	ABC13116
MLOC_47621.1	239	3e-114	1 - 239	98	234 / 239	None	ABC13116
MLOC_8861.2	790	5e-107	1 - 227	98	222 / 227	None	ABC13116
MLOC_8861.1	672	5e-107	1 - 227	98	222 / 227	None	ABC13116
MLOC_46719.1	338	1e-83	1 - 179	98	176 / 179	None	ABC13116
MLOC_52976.1	299	8e-61	170 - 297	100	128 / 128	None	ABC13116