barSeed - Barley Seed Development Database

Probe CUST_32192_PI390587928

Source Contig U35_11471

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_32192_PI390587928	Hv_44K_v2	CTATAGGCTGATAGATTCAGCAATTCTTGACTGAAAATACAAGCGTCATTGATCGTTTAA	335	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_54996.1	3169	3e-22	1239 - 1297	98	58 / 59	plus	ABC10091 ABC10092 ABC21364
JLOC1	JLOC1_35446.1	2900	1e-22	1784 - 1842	98	58 / 59	minus
Harvest21	ABC21364	410	3e-25	16 - 75	100	60 / 60	minus	ABC21364
Harvest35	U35_11471	410	3e-25	336 - 395	100	60 / 60	plus

Contig Sequence (410 bp)

>U35_11471 410 Hv_44K_v2
GAGGCCGCCTTCCTCGGCCTGCTCGAGGAGATCCACCCCGCCGTGTCCAGTAAGCCGCTG
GAGGCGGCGAGGGGCAACGGGGATGGCGACGACGACGTCCTGGTGCTCAAGGGCATCTCG
CTGTCGCAGGAGCTGTCCATGATGGAGACCAGCGCCATGAAAACACCGAGCAGGTGCTCT
TCATGCTCCTCGTGATACCATACGACACGATACCATACCATATGATGTATTCAGCGATTA
ATCTTAGCAGAAAATACAAACGTCTCTTCATGCTCTCCACCAAGCGTGATGAAGACATCA
AGCAAGTGCTCTTCATGCTCGTGATATTATGATACCTATAGGCTGATAGATTCAGCAATT
CTTGACTGAAAATACAAGCGTCATTGATCGTTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_11471 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None