barSeed - Barley Seed Development Database

Probe CUST_32190_PI390587928

Source Contig U35_11473

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_32190_PI390587928	Hv_44K_v2	GTTTGTTACTTTTAACGAGAATTCAGCTTAGACCTGTTTTCAATATACTGCGATTGGTGA	630	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_59709.1	3463	2e-24	3398 - 3457	100	60 / 60	plus	ABC02110 ABC11880 ABC48910
JLOC1	JLOC1_38871.1	3453	1e-22	3398 - 3453	100	56 / 56	plus
Harvest35	U35_11473	705	3e-25	631 - 690	100	60 / 60	plus

Contig Sequence (705 bp)

>U35_11473 705 Hv_44K_v2
GTAAGTATGTTCCGCCGCACAAACGTGTCGGCGAGAGTAGCAACCAGAGGCTGGCTGTCG
TGCATGAACCAGACCGTTGGGGTCCGCGCCAAGAGGCTCCACTTGCACGGGATGTGCGCC
CCCTCCGCCAGGAGGCACGCCAAGAGGCTCCACTTGCACGGGATGTGCGGCCCCTTCGCC
AGGAGGCACGCCAAGAGGCAGTCCCGGCTGTTCTGCCTGAAGCAGACCGCTGGAGCCGCA
ATGCTGTGCGTCCCCTCCGCCAAGAAGCTCCTCCCGCACGCCAAGAAGCGCCCCCTGCCC
GCCAGCCGGATGGTGCTCCTCCAGCTGGTGGTACTACTGACCGCTGGCGTCCTGGTGGTG
GATCTAGGCCCTCTGCAAATTCTTCATCGGCTTCTTCGTCCACAGGCTGGAGGAAGAACT
GAAGCTGCCCGCCCTGAAATGCATGCCTGTGCCCTGCCAGCAGGTTAAGATTTTTGCAGT
TACTTGAATTTGTCTGTCTCGCATCAAATTTTGTTCCTAAGCGTGGACTCTTCTTCTAGG
CTCCCTTCCATTGCACACCTTTGCACCGTTTCAAAGTCGGTGTTAATTTTGATCTTTTGA
GACATCATACTCCATCCATAACGTGTTGCTGTTTGTTACTTTTAACGAGAATTCAGCTTA
GACCTGTTTTCAATATACTGCGATTGGTGAAAAAAAAAAAAAAAA

Homology of Contig U35_11473 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None