barSeed - Barley Seed Development Database

Probe CUST_32149_PI390587928

Source Contig U35_47415

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_32149_PI390587928	Hv_44K_v2	GCACCATATGCCATAACCGAAGATTTCATGAACAAGCTATTCAATGAGTACAATATTGAT	573	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_61314.3	1478	2e-24	602 - 661	100	60 / 60	plus	ABC08641 ABC13814
MLOC	MLOC_61314.2	2906	2e-24	604 - 663	100	60 / 60	plus	ABC08641 ABC13814
MLOC	MLOC_61314.1	1877	2e-24	678 - 737	100	60 / 60	plus	ABC08641 ABC13814
JLOC1	JLOC1_40061.4	1374	8e-25	95 - 154	100	60 / 60	plus
JLOC1	JLOC1_40061.3	994	8e-25	134 - 193	100	60 / 60	plus
JLOC1	JLOC1_40061.2	1110	8e-25	250 - 309	100	60 / 60	plus
JLOC1	JLOC1_40061.1	1961	8e-25	682 - 741	100	60 / 60	plus
Harvest21	ABC48454	645	3e-25	574 - 633	100	60 / 60	plus
Harvest35	U35_47415	645	3e-25	574 - 633	100	60 / 60	plus

Contig Sequence (645 bp)

>U35_47415 645 Hv_44K_v2
CGGACCACAGCTCCGTCCGTCTCCGAGACCTCCCACCCATCTCCCATGGCGAAGGCCCCT
CCAGCCGCCCGCCCGCATCCCTAACCCTAGGCTAGATCCCGCCGCACCTCGCGCGCTCGC
GAGACCAAACACACGCCTCTGACCACTCCCCCCCAGCCCCGCTGACTCCTCTGGGTCCGT
GAGTCCATTGCTTTACCCATGGATTCGGCTAGTAGCAGCGCGCGGACGGTGGCGGCGTGC
GTGATCGGCGGGATCGTGCTGGGCGCCTCGGTGGTCGCGCTGCACCTCGGCGCTGGCCCC
GCGGCCCCGAGTCTGCCACCGGTCGAGGCCCTCCGGCGGCGCTTCCGCCGCCGCTGCCGC
CCCGTGCGGGTCTACATGGACGGCTGCTTCGACATGATGCACTACGGTCACTGCAACGCG
CTGCGCCAGGCACGGGCGCTCGGGGACGAGCTCGTCGTCGGCGTCGTCAGCGACGACGAG
ATCACCGCCAACAAGGGACCCCCCGTCACGCCGCTCCACGAGAGAATGAAAATGGTCCGT
GCTGTCAAATGGGTTGACGATGTCATTCCAGATGCACCATATGCCATAACCGAAGATTTC
ATGAACAAGCTATTCAATGAGTACAATATTGATTACATTATTCAT

Homology of Contig U35_47415 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g02820.1	425	6e-64	protein\|cytidylyltransferase domain containing protein, expressed
Brachypodium v1_2	Bradi4g26020.1	426	2e-66
Arabidopsis v10	AT2G38670.1	421	1e-52	\| Symbols: PECT1 \| phosphorylethanolamine cytidylyltransferase 1 \| chr2:16168979-16171680 FORWARD LENGTH=421