barSeed - Barley Seed Development Database

Probe CUST_32141_PI390587928

Source Contig U35_23461

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_32141_PI390587928	Hv_44K_v2	ATGCAGGTCATTATGTGCCACAACTTGCTGACCTTGTCTATGAGAGGAACAAAGGCAAGA	680	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_11531.1	1993	2e-24	804 - 863	100	60 / 60	plus	ABC09898
MLOC	MLOC_11531.6	1824	2e-24	672 - 731	100	60 / 60	plus	ABC09898
MLOC	MLOC_11531.4	2066	2e-24	759 - 818	100	60 / 60	plus	ABC09898
MLOC	MLOC_11531.3	1016	2e-24	759 - 818	100	60 / 60	plus	None
MLOC	MLOC_11531.2	1925	9e-22	770 - 824	100	55 / 55	plus	ABC09898
JLOC1	JLOC1_7641.1	2112	8e-25	820 - 879	100	60 / 60	plus
JLOC1	JLOC1_7641.2	2007	5e-22	756 - 810	100	55 / 55	plus
Harvest21	ABC20502	1036	3e-25	681 - 740	100	60 / 60	plus
Harvest35	U35_23461	1036	3e-25	681 - 740	100	60 / 60	plus

Contig Sequence (1036 bp)

>U35_23461 1036 Hv_44K_v2
GCTAGTGTGATCTCACTCTCACACACATTGAGTTGTGCCCAACCCCTCTCTGCTCTTGCT
GTCCTAGCCAAGCCACTCACTCTCACATTTGCACATTCTCATGGCGGCAGCAGCAGCGAG
CCAAGACAAGCAGCGGCGGCAGCTCATCCTTGCTCTCTTTCTCCTCGTCTTGGCCTCCCG
GAGTTGGCGCTGCTGCTCGGCAGGTTACGGTAGTGAGCAGGAAGCTGATAGGGTGGTCTT
CCTCCCCGGTCAGCCAAGGAGCCCGCCGGTCTCTCAGTTCTCCGGGCATGTCACCGTCAA
CAAACGGAATGGCAGGGCGCTCTTCTACTGGTTCTTCGAGGCTCAGTCACAGCCCTCATA
CAAGCCTCTCCTGCTCTGGCTCAATGGAGGACCAGGCTGCTCATCAGTTGGATACGGAGC
TGCTTCTGAGCTAGGACCTCTCAGGGTGAGCAGATTTGCAGCAGGGCTCGAGTTCAACAA
GTTTGCATGGAACAAAGAAGCCAACTTGCTCTTCGTGGAGTCTCCTGTTGGGGTTGGCTT
CTCCTACACCAACACATCCTCTGACCTCACCAACCTCAATGATGATTTTGTAGCTGAGGA
TACATATAATTTCCTGATTAATTGGTTCAAGAGGTTTCCGCAGTACAAGGACCGGGAATT
CTACATCTCAGGAGAGAGCTATGCAGGTCATTATGTGCCACAACTTGCTGACCTTGTCTA
TGAGAGGAACAAAGGCAAGAAGGCCAACACATACATCAACTTTAAAGGGTTCATTGTTGG
CAATCCATTAACTGATGATTATTATGACTCGAAGGGACTGGCTGAATATGCTTGGAGTCA
TGCAGTTGTATCAGATGAAGTTTACGATCGCATAAAAAAGGATTGTGATTTTAGAGCCTC
AAACTGGACCGATGATTGCAACAAAGCCATGAACACCATCTATGGACAGTACCAGTTGAT
CGACATATACAACATTTATGCGCCCAAGTGCAATCTTGGACAAACATCAGCAGCATCTGT
TGTTGATACAGAACTC

Homology of Contig U35_23461 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g22954.1	501	3e-168	protein\|serine carboxypeptidase, putative, expressed
Brachypodium v1_2	Bradi2g12450.1	474	3e-178
Arabidopsis v10	AT3G17180.1	478	2e-131	\| Symbols: scpl33 \| serine carboxypeptidase-like 33 \| chr3:5855861-5859157 REVERSE LENGTH=478