- Probe CUST_32063_PI390587928
- Source Contig U35_16569
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_32063_PI390587928 | Hv_44K_v2 | CCATTGTAAAATACCACGATGACGATGATGATGATGAAAAACGATGTTACTTGAGTTCAA | 462 | GeneList: darkturquoise MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.535 | 0.596 | 1.466 | 2.185 | 1.090 | 1.206 |
| Raw | 787.568 | 1383.891 | 2994.520 | 6743.223 | 1232.931 | 1483.748 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_26534.1 | 764 | 6e-24 | 142 - 200 | 100 | 59 / 59 | minus | ABC05348 ABC11923 ABC14284 |
| JLOC1 | JLOC1_18020.1 | 693 | 3e-24 | 155 - 213 | 100 | 59 / 59 | minus | |
| Harvest21 | ABC05348 | 536 | 3e-25 | 460 - 519 | 100 | 60 / 60 | plus | ABC05348 |
| Harvest21 | ABC05349 | 511 | 6e-22 | 455 - 511 | 98 | 57 / 58 | plus | |
| Harvest35 | U35_16569 | 539 | 3e-25 | 463 - 522 | 100 | 60 / 60 | plus |
Contig Sequence (539 bp)
>U35_16569 539 Hv_44K_v2 ACGAGGCAGCCTTCCGCCCAGTTCATTCATAATCCACAAAGTCCGACTAGTCAACGAAAA GAGAGATCATGGCGGGTGCGGCGAAGGCATCTTGGATGGTGGCCATGAGCGTGGGCGCTG TGGAGGCCCTCAAGGACCAGGCCGGCCTCTGCCGCTGGAACTACGCGCTCAAGTCCATCC AGCGAGCTGCCAAGGCCAGGGCCAACGTGCGAGCCAGCGTGTCGCAGGGCAAGAAGCAGC TACCTGCCTCTGCCTCGGCCATGGCGGAGAAGGCCGAGGAGGGGCTGAGGACCGTCATGT ACCTCAGCTGCTGGGGTCCCAATTAGTAGTAGCTGATACCTGAGAGCCAGGAGGTGTTTT CTCCTAGCTCCATCCATGACGCCTTTGATGCATGAGGAGCTTTTGTGAAAGCCTGAAACA ACCATGTCCTCAAACCTGGCTGGCCTCCTTGGGAAGAACCCCCCATTGTAAAATACCACG ATGACGATGATGATGATGAAAAACGATGTTACTTGAGTTCAAAAAAAAAAAAAAAAAAA
Homology of Contig U35_16569 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |