barSeed - Barley Seed Development Database

Probe CUST_32010_PI390587928

Source Contig U35_30873

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_32010_PI390587928	Hv_44K_v2	TGTGTCATCGTTCGTCATTGCCAACACGGTGTCATCGACCCCGTACCTACTGCTCATCTC	350	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_54243.3	1716	2e-24	622 - 681	100	60 / 60	minus	ABC01488
MLOC	MLOC_54243.5	1663	2e-24	436 - 495	100	60 / 60	minus	ABC01488
MLOC	MLOC_54243.4	807	2e-24	345 - 404	100	60 / 60	minus	None
MLOC	MLOC_54243.2	2496	2e-24	811 - 870	100	60 / 60	minus	ABC01488
MLOC	MLOC_54243.1	1955	2e-24	811 - 870	100	60 / 60	minus	ABC01488
MLOC	MLOC_54243.6	2383	2e-24	436 - 495	100	60 / 60	minus	ABC01488
JLOC1	JLOC1_34906.1	2511	8e-25	1690 - 1749	100	60 / 60	plus
Harvest21	ABC30981	447	3e-25	351 - 410	100	60 / 60	plus
Harvest35	U35_30873	447	3e-25	351 - 410	100	60 / 60	plus

Contig Sequence (447 bp)

>U35_30873 447 Hv_44K_v2
GTCACACGGCAGATCGTCGACATACGTGGCATCGGAGGGGACGTGGTGAAAATGGATGGG
CAACAGCCAAGCTTCCTCACGCAATCCTTCGTGCTGACCAAGAGGTCCTTCATCAACATG
TACAGAGACCTCGGCTACTACTGGCTCCGCTTTGCCATCTACATCGCCCTTTGCCTTTGC
TGCGGCACCATCTTCTATGACATCGGCCAGAACTATGGATCCATTCAGGCTCGTGGCTCC
ATGCTTATGTTCGTCGGTGCCTTCCTCACCTTCATGGCCATCGGAGGATTCCCGTCTTTC
GTCGAGGATATGAAGATATTCGGGAGGGAGAGGTTGAACGGGCACTACGGTGTGTCATCG
TTCGTCATTGCCAACACGGTGTCATCGACCCCGTACCTACTGCTCATCTCCCTGGTGCCG
GGCGCGATGGCCTACTATCTTGTGGGC

Homology of Contig U35_30873 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g29660.1	722	5e-77	protein\|white-brown complex homolog protein 11, putative, expressed
Brachypodium v1_2	Bradi4g32850.1	749	2e-86
Arabidopsis v10	AT1G17840.1	703	3e-54	\| Symbols: WBC11, ABCG11, DSO, COF1, ATWBC11 \| white-brown complex homolog protein 11 \| chr1:6142870-6145894 FORWARD LENGTH=703