barSeed - Barley Seed Development Database

Probe CUST_32000_PI390587928

Source Contig U35_16585

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_32000_PI390587928	Hv_44K_v2	GGTGGTGAAGGTGATGATATGGGTTTCCTATCTTCAGAAGTAAAATGTTTGCTTGCTACC	1114	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK374283	5442	2e-23	761 - 818	100	58 / 58	plus	ABC49812
MLOC	MLOC_71850.1	937	2e-23	630 - 687	100	58 / 58	plus	ABC49812
MLOC	MLOC_71850.3	1239	2e-23	789 - 846	100	58 / 58	plus	ABC49812
MLOC	MLOC_71850.2	1073	2e-23	629 - 686	100	58 / 58	plus	ABC49812
MLOC	MLOC_71850.5	1102	2e-23	787 - 844	100	58 / 58	plus	ABC49812
JLOC1	JLOC1_47773.1	1335	1e-23	626 - 683	100	58 / 58	plus
Harvest21	ABC06045	1447	3e-25	1115 - 1174	100	60 / 60	plus	ABC06045
Harvest35	U35_16585	1447	3e-25	1115 - 1174	100	60 / 60	plus

Contig Sequence (1447 bp)

>U35_16585 1447 Hv_44K_v2
CAGATCCGGTGGGGACTTCACTGGATCCGGCCAGGGCGGACCGGATCCCAACGTCGTGGC
TCCATTTCCGGCGCGAGAGAATAGTTCCCGGCGACGAACTCACGGATGGACAGTCGTAGC
TGGCGGCTCGCATTCATGGCGTTAGGACGACTGCTCGGGATAGAAGCGCACGGGCGCGAC
GAGAAGAGGGGCACGGGCAAGGGGCGACCAACCTGGCTGGCTCTCGTCACGGATCTGCAG
GAGGCCATCCAAGCCAAGAGAAGTTGTGGACCCCGAAGTCCAAGAAGGCGGTGACGGTGC
AGCGGAAGGCCAACCCCTCTTGCAGGATCTGGTTTGTCTGCAAAGGAAACCTCATCTGCA
CTAGGTACGCATATGTGGCCGCAGGGATGGATGCCTTCCCCTCTACTATTGATCCATATA
AAGAACATCCACAAGGGCAAGGATGGGAGCTGGCTGAACTTTGTAGTGCCAAAACTGGTC
TGAATGCTCTCAATTCAACTTTAATTTCCAAGGCTTGATTTAAGTGTGCCTTGGTTCGGC
CTAAGTATAGTTGGCTGAATCTGTGTGTTTCCTAATTGTAACAATATGTGTAGTTTAGGA
TTGTTGGCATTCAAAAGCTCCTGCTTGTTTCCATTATGACTAGTTCTTCACATGAAATTT
CTACTAATTCATAGTTCATGAAATATAACTGATGCTAATATCAAGTTGTTGCCGAGAAGA
AGGCAACGTCTCTTACATATGTATTTGTGCTAACTTACTGCAAACTGCTAAATGTTGAAT
AGTGAGTTATCATTCTCTTAAAAAAAGAGTGAATTTTGGATGTGAGTCTTTTATCAGCTA
GTGCCACTTTCAACAACTTTTTGTTGATTTTGCTGAATCGATTACTTATTTTTCCGGAAT
ATACTAAAGTCAGGGAGTTTTGCGTGGCTGATACTAGTAATGTAGTTCGATTTTCAGTTG
TGTAGAATCTGAAACTGTTGTTTTTTTCCTCTGGTTCTAATTCGCTTTGTTGTCGATGTT
TCTGTGCGAGCGCAGGCTCGTGGTGAAGAACTGCAAGGCCGAGCAGGACCTTTCGGGGGT
TTCTTAGCAGTATGGATACCTAGGTCAAGCTTGCGGTGGTGAAGGTGATGATATGGGTTT
CCTATCTTCAGAAGTAAAATGTTTGCTTGCTACCTTCTTTAGGATGTTTACCTTCATTCG
CGTTTCGTCGCAAGGTCCAGGACAAAGAAGTCAGGAGAAGCACAAAGTTCTTGATCATTG
GAGCTAGTTATTGTTTTGGTTTTTTAGTTGTGTTACCTGATGTGAACTAGTTTTGATTGT
AAACCTGATGCGAACCATGTTTGATTGAAATGTGCCAAGTTTAGATATGTTTGATTGTAT
TCATGATGTGACAGAGGTTCAAGTTATAATGGTTGTTTGACATATTTTGTAAAAAAAAAA
AAAAAAA

Homology of Contig U35_16585 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None