barSeed - Barley Seed Development Database

Probe ABC49812

Source Contig ABC49812

barSeed

Links

Affymetrix Source Sequence (666 bp)

>ABC49812 666
CAAATCATGTGCTATTTATGGTTACTTTTATGCCACCTTCTTGATTACTTAGCTGAATTA
TGTTTTGTGTACTAAACAGCAGGTGTGGTATTTGGCTTCCATGTGCAAACATGATAAGTA
TGTATACTTCTTTGAGGTTCAAATTCTATAGATGTTGCATAATATTGGTGTCAAAGTGCC
TCTCCTTAGGGATTGATTTAAACCGCATATGAGCTACTAAAACAATTTTATTGCTGTTCA
AACATGAAATTCTAGTTCTTTGTTTCAAACATCGAAATGTTGTTTACCTTGTCCTTCTAT
GCTTAAATGGTAAAAATGTCGCATTTATAGGATTGTACACCTGATGTGATCGGAGTAGGA
TTTACTCGCTGCTCACAGTTACTACTTGTATTCACTGATTTCTATGCCTCATTTTGCTTG
TTGTACTCTGATTTACACAGAAAAACTGCTTACAAGTTAGTGTGATGTTAGATTTTCTTT
TATTTTGTTCTTAACTATTTTGTCTGATAACTTGCAGATGTTGGCCTTCATTCATGTTTC
GTCGCAAGGTCCAGGAAGAAGAAGTCAGGAGAAGCACAAAGTTCTTGATCATTGGAGCTA
GTTATTGTTTTATTTTTTAGTTGTGTTACCTAATGTGAACTAGTTTTATTGTAAACCTAT
CTAACC

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
MLOC_72785.5	2888	0.0	2199 - 2868	99	666 / 670	None	ABC06045 ABC06046 ABC06047 ABC07418 ABC49812
AK354907	2073	0.0	1509 - 2012	93	481 / 517	CUST_12166_PI390587928	ABC06045 ABC06046 ABC49812
AK374283	5442	8e-158	836 - 1194	95	340 / 359	CUST_32000_PI390587928	ABC49812
MLOC_41063.2	658	2e-139	247 - 567	95	304 / 321	CUST_31994_PI390587928	ABC06045 ABC06046 ABC06047 ABC49812
MLOC_71850.3	1239	3e-132	903 - 1239	93	312 / 337	CUST_32000_PI390587928	ABC49812
MLOC_71850.2	1073	6e-129	743 - 1073	92	306 / 331	CUST_32000_PI390587928	ABC49812
MLOC_71850.4	883	7e-109	633 - 883	95	239 / 251	None	ABC49812
MLOC_71850.5	1102	7e-109	862 - 1102	96	232 / 241	CUST_32000_PI390587928	ABC49812
MLOC_71850.8	1004	5e-105	761 - 1004	95	232 / 244	None	ABC49812
MLOC_71850.1	937	2e-104	705 - 937	96	224 / 233	CUST_32000_PI390587928	ABC49812
MLOC_47607.1	517	1e-90	60 - 335	88	252 / 285	None	ABC49812
AK252167.1	568	9e-68	312 - 465	97	150 / 154	CUST_32001_PI390587928 CUST_12166_PI390587928 CUST_14863_PI390587928 CUST_31997_PI390587928	ABC06045 ABC06046 ABC06047 ABC07418 ABC49812
MLOC_72785.3	564	2e-64	381 - 524	98	141 / 144	CUST_12166_PI390587928 CUST_31994_PI390587928	ABC06045 ABC06046 ABC06047 ABC07418 ABC49812
MLOC_72785.4	2627	6e-55	2325 - 2441	100	117 / 117	CUST_12166_PI390587928 CUST_31994_PI390587928	ABC06045 ABC06046 ABC06047 ABC07418 ABC49812
MLOC_72785.1	599	7e-64	417 - 559	98	140 / 143	CUST_12166_PI390587928 CUST_31994_PI390587928	ABC06045 ABC06046 ABC06047 ABC07418 ABC49812
MLOC_72785.2	602	7e-64	420 - 562	98	140 / 143	CUST_31994_PI390587928 CUST_12166_PI390587928	ABC06045 ABC06046 ABC06047 ABC07418 ABC49812
MLOC_41063.1	289	6e-60	53 - 200	95	141 / 148	CUST_31994_PI390587928	ABC06045 ABC06046 ABC06047 ABC49812