barSeed - Barley Seed Development Database

Probe CUST_31993_PI390587928

Source Contig U35_42851

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_31993_PI390587928	Hv_44K_v2	AGGAAAAATGATGTCACAAGAAACTCAACAGTTCTTGGCCTCGATCTCCAATTCTCCCAA	348	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_12497.1	1786	3e-21	1528 - 1584	98	56 / 57	plus	ABC04183 ABC44386
MLOC	MLOC_12497.2	1931	3e-21	1665 - 1721	98	56 / 57	plus	ABC04183 ABC44386
Harvest21	ABC38806	698	3e-25	349 - 408	100	60 / 60	minus
Harvest35	U35_42851	698	3e-25	349 - 408	100	60 / 60	minus

Contig Sequence (698 bp)

>U35_42851 698 Hv_44K_v2
GGGAAGAACTTGACACGGGGTGGCGCCCAGCTTTTCCAGGTCAGCTTCCATGCATTGCAG
CTAGTGGAGCCCTGGAAGGTGACGAGGTACGCACTGCGCGCAGAGTAGCAGCCATTTGAA
GTCCACCTCCAGATTAGCTGGTCCGGTCCCTCGGTGAGAACAAAGCCTTCGGTTTCGCGC
CACAGCAGCAAGTATTGGCCTATTTCATGGATGCCTAGGTGGCCGTGGATGTCTCTAGCC
CAGGTGTGGTTGAGGAGGCCTTCTGCAATGGTGCGCTGCTTGCGCCGTCGCTTGGGGATG
CAAGCGTATAGCCTTGGCGCGACCTCGCTGACGGAGCGGCCACCGTCCTTGGGAGAATTG
GAGATCGAGGCCAAGAACTGTTGAGTTTCTTGTGACATCATTTTTCCTAATTGGGTCATA
AAAGTTACTAGTATACTGGTACCCCAGTTCCTGAACATGTGTTTTCTGGGATCTTGCACA
GAACCCAATACAAATCTAGGAATGACCATATTACCCACATTCATTTGGTTACTTTTTCTT
GCTGGGATGATGTGTGTCACTCTAGTCCATACCAACATTCAGATAAATGAGAATTAACGA
AACATGATACAAATTTAAGAGAAAAATGGTTGAAAGTTATATCAAAATCGTGGAATCAGA
TGCACATTTGGAATGGAAGTTGAAGCTATAATTTTGCA

Homology of Contig U35_42851 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None