barSeed - Barley Seed Development Database

Probe CUST_31959_PI390587928

Source Contig U35_28705

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_31959_PI390587928	Hv_44K_v2	AGTTCGCCAAGAAACTAGCATCCGTTGCTGATCTTTATGTAAACGATGCCTTTGGCACTG	511	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK354003	1648	2e-24	541 - 600	100	60 / 60	plus	ABC00917 ABC00994 ABC16294
MLOC	MLOC_16517.1	1062	2e-24	606 - 665	100	60 / 60	plus	ABC00917 ABC00994 ABC16294
JLOC1	JLOC1_11373.1	1194	8e-25	599 - 658	100	60 / 60	plus
Harvest21	ABC27715	637	3e-25	512 - 571	100	60 / 60	plus
Harvest35	U35_28705	637	3e-25	512 - 571	100	60 / 60	plus

Contig Sequence (637 bp)

>U35_28705 637 Hv_44K_v2
GAGAAAGCTAACACTTTCCCTTCCTCGACTCAAACTCCATTCCCATCCACCTCACCTCGC
GGCTGAAATCACCCCATCTACCCCGACCGATCCCTGGCCTGGGGAGGGGAAGGAATGCCG
ACCAAGAGGAGCGTGGGCACCCTGGGCGACAAGGACCTCGGCGGGAAGAAGGTGCTCCTC
CGCGCCGACCTGAACGTGCCGCTGGACGACGGACAGAGGATCGCCGACGACAACCGCATC
CGCGCCTCCGTGCCCACCATCAAGTTCCTCATGGGGAAGGACGCCAAGGTCGTCCTCGCC
AGCCATCTGGGCCGTCCAAAAGGTGTCACCCCGAAGTACAGCTTGAAGCCTCTTGTTCCA
CGCCTGTCTGAGCTTCTTGGGGTTGATGTTGTGATGGCCAATGACTGCATCGGTGAGGAA
GTAGAGAATTTAGCTGCTGCTTTACCAGATGGAGGTGTTTTACTTCTAGAAAATGTTAGA
TTCTACAAGGAGGAAGAGAAGAATGACCCTGAGTTCGCCAAGAAACTAGCATCCGTTGCT
GATCTTTATGTAAACGATGCCTTTGGCACTGCACACAGAGCACATGCTTCAACAGAGGGG
GTTACCAAGTATTTGAGGCCTGCTGTCGCTGGCTTTC

Homology of Contig U35_28705 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g45710.1	402	8e-94	protein\|phosphoglycerate kinase protein, putative, expressed
Brachypodium v1_2	Bradi3g05220.1	402	1e-93
Arabidopsis v10	AT1G79550.1	401	1e-83	\| Symbols: PGK \| phosphoglycerate kinase \| chr1:29924347-29926295 REVERSE LENGTH=401