barSeed - Barley Seed Development Database

Probe CUST_31906_PI390587928

Source Contig U35_15641

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_31906_PI390587928	Hv_44K_v2	CGAAAAGATTGGCTGTTCAATTTGAACCTTATGTGGTTGGAAAACAAATGGTGATTTTTC	557	GeneList: darkgreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.229	1.723	2.150	1.055	0.406	0.786
Raw	3.522	53.153	62.979	54.289	5.931	14.001

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_49377.1	1849	8e-25	1656 - 1715	100	60 / 60	plus
Harvest21	ABC07356	1713	3e-25	1604 - 1663	100	60 / 60	plus	ABC07356
Harvest35	U35_15641	634	3e-25	558 - 617	100	60 / 60	plus
Harvest35	U35_15644	1750	1e-23	1639 - 1695	100	57 / 57	plus

Contig Sequence (634 bp)

>U35_15641 634 Hv_44K_v2
GAGGCTGGTGTCCGCGAGCCAGACGATCCTGCCGGACTCGGAGGGCGCCATCGACGGCCA
CCTCCGGGAGGTCGGACTCACCTTCCACCTCCTCAAGGACGTGCCGGGGCTCATCTCCAA
GAACATCGAGCGTGCCCTAGAGGAGGCCTTCAAGCCGCTGGGCATCGACGACTGGAACTC
CGTCTTCTGGATAGCGCACCCAGGCGGCCCGGCGATCCTCGACATGGTCGAGGCCAAGGT
AAACCTGAACAAGGAGCGGATGCGCGCAACCAGGCATGTCCTCTCCGAGTACGGCAACAT
GTCCAGTGCATGTGTCCTTTTCATCATGGACGAGATGCGCAAGCGCTCTGCCGAGGATGG
CCACGCCACAACCGGCGAGGGAATGGACTGGGGCGTTCTCTTCGGCTTCGGCCCCGGCCT
CACGGTGGAGACCGTCGTCCTCCACAGCGTCCCCATCAGCGCCGTCGCATACTACTAGTA
GTAACACAACCGAGCTTTTACAGGTTTATTAAGCAAGTGTGGTCATGATGTGGAGTGTGA
GGTGTATTACCTGTGTACGAAAAGATTGGCTGTTCAATTTGAACCTTATGTGGTTGGAAA
ACAAATGGTGATTTTTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_15641 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os11g32650.1	399	4e-97	protein\|chalcone synthase, putative, expressed
Brachypodium v1_2	Bradi4g17230.1	401	1e-102
Arabidopsis v10	AT5G13930.1	395	1e-88	\| Symbols: CHS, TT4, ATCHS \| Chalcone and stilbene synthase family protein \| chr5:4488762-4490035 FORWARD LENGTH=395