barSeed - Barley Seed Development Database

Probe CUST_31905_PI390587928

Source Contig U35_15642

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_31905_PI390587928	Hv_44K_v2	AAAGGCGATCAAGGAGTGGGGACAGCCACGGTCTAAGATCACCCACCTCGTCTTCTGTAC	440	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_64305.2	1717	7e-23	1007 - 1063	100	57 / 57	minus	ABC07356 ABC07358 ABC11343
MLOC	MLOC_64305.1	1461	7e-23	822 - 878	100	57 / 57	minus	ABC07356 ABC07358 ABC11343
JLOC1	JLOC1_42211.1	1678	4e-23	574 - 630	100	57 / 57	plus
Harvest21	ABC07357	551	3e-25	441 - 500	100	60 / 60	plus
Harvest35	U35_15642	551	3e-25	441 - 500	100	60 / 60	plus

Contig Sequence (551 bp)

>U35_15642 551 Hv_44K_v2
ATCTGTACTCATTCAGCTGCCTCCGGCAAACTTAGACGTCACACGGATCCCCCATCTCGC
AGCCAACCTAGTCGGCCGCTGGTACGTACTGAGAGTTCAATGGCGGCGACGATGACGGTG
GAGGAGGTGAGGAAGGCGCAGCGGGCGGAGGGGCCGGCCACGGTGCTGGCGATCGGCACG
GCGACCCCGGCAAACTGCGTGTACCAGGCCGACTACCCGGACTACTACTTCAAGGTCACA
AAGAGCGACCACATGGCCGACCTCAAGGAGAAGTTCAAGAGGATGTGTGACAAATCGCAG
ATCAGGAAGAGGTACATGCACCTAACGGAGGAGATCCTACAGGAAAACCCCAACATGTGC
GCCTACATGGCGCCGTCTCTGGACGCGCGCCAGGATATTGTGGTTGTCGAGGTCCCAAAG
CTCGGGAAGGCGGCGGCGCAAAAGGCGATCAAGGAGTGGGGACAGCCACGGTCTAAGATC
ACCCACCTCGTCTTCTGTACCACCTCCGGTGTGGACATGCCGGGGGCCGACTACCAGCTG
ACCAAGATGCT

Homology of Contig U35_15642 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os11g32650.1	399	2e-97	protein\|chalcone synthase, putative, expressed
Brachypodium v1_2	Bradi4g17230.1	401	3e-100
Arabidopsis v10	AT5G13930.1	395	3e-82	\| Symbols: CHS, TT4, ATCHS \| Chalcone and stilbene synthase family protein \| chr5:4488762-4490035 FORWARD LENGTH=395