barSeed - Barley Seed Development Database

Probe CUST_31904_PI390587928

Source Contig U35_15643

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_31904_PI390587928	Hv_44K_v2	CACACAAGTTTGCACTATATTCTACCGTATATGGTTTGTAATAGAAGGGACTATTTCTCT	578	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_7936.2	3596	7e-23	2596 - 2655	98	59 / 60	plus	ABC07356 ABC07358 ABC11343 ABC16574
MLOC	MLOC_7936.1	3358	7e-23	2487 - 2546	98	59 / 60	plus	ABC07356 ABC07358 ABC11343 ABC16574
JLOC1	JLOC1_5252.1	2706	4e-23	1889 - 1948	98	59 / 60	plus
Harvest21	ABC07358	667	3e-25	31 - 90	100	60 / 60	minus	ABC07358
Harvest35	U35_15643	691	3e-25	579 - 638	100	60 / 60	plus

Contig Sequence (691 bp)

>U35_15643 691 Hv_44K_v2
GATCGTCGGCGCAGACCCCGACGTGTCCGTCGAGGGCCCCCTGTTCCAGCTGGTGTCCGC
GAGCCAGACAATTCTGCCAGACTCGGAGGGCGCCATCGACGGCCACCTTCGTGAGGTTGG
ACTCACCTTCCACCTCCTGAAGGACGTGCCCGGGCTCATCTCCAAGAACATCGAGCGCGC
CCTAGAGGACGCCTTCAAGCCATTGGGCATCGATGACTGGAACTCCGTCTTTTGGATAGC
GCACCCCGGCGGGCCAGCAATCCTTGACATGGTGGAGGCCAAGGTAAACCTGAACAAGGA
ACGGATGCGCGCCACCAGGCATGTCCTCTCCGAATATGGCAACATGTCGAGCGCCTGCGT
GCTCTTCATCATGGACGAAATGCGCAAACGCTCCGCTGAGGATGGCCACACCACGACTGG
CGAGGGAATGGACTGGGGCGTTCTCTTCGGCTTCGGCCCCGGCCTTACCGTGGAGACGGT
CGTTCTCCATAGCGTCCCCATCACTGCCTAGGCCAGCGCATGATCGCTCGTCCTCCATTT
ATCTTGGGCATGGAAACATCTACTACTGTTGCTGTCCACACACAAGTTTGCACTATATTC
TACCGTATATGGTTTGTAATAGAAGGGACTATTTCTCTATATGCATGATATTTAGAGATT
CAGATAAATTATTGCAAAAAAAAAAAAAAAA

Homology of Contig U35_15643 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os11g32650.1	399	7e-106	protein\|chalcone synthase, putative, expressed
Brachypodium v1_2	Bradi4g17230.1	401	8e-110
Arabidopsis v10	AT5G13930.1	395	9e-95	\| Symbols: CHS, TT4, ATCHS \| Chalcone and stilbene synthase family protein \| chr5:4488762-4490035 FORWARD LENGTH=395