barSeed - Barley Seed Development Database

Probe CUST_31903_PI390587928

Source Contig U35_15644

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_31903_PI390587928	Hv_44K_v2	CGAAAAGATTGGCTGTTCAATTTGAACCTTATGTGGTTGGAAAACAAATGGTGATTTAAC	1638	GeneList: darkgreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.295	1.850	2.798	1.493	0.607	0.822
Raw	4.171	53.352	72.130	66.061	8.220	13.087

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_49377.1	1849	4e-23	1656 - 1712	100	57 / 57	plus
Harvest21	ABC07356	1713	1e-23	1604 - 1660	100	57 / 57	plus	ABC07356
Harvest35	U35_15644	1750	3e-25	1639 - 1698	100	60 / 60	plus
Harvest35	U35_15641	634	1e-23	558 - 614	100	57 / 57	plus

Contig Sequence (1750 bp)

>U35_15644 1750 Hv_44K_v2
TCGAGCACTGTTGGCCTATACACCACACCAGTACACACGCAGCATCTCACATTTGTCTCG
CAGCACAGACGTCACACGGAGCCTTGATCTCGCAGCAGCTCTACCCGGCCGGCCGGTCAC
TGGTGAGACAAGGACTAGCTAGCTAGCTCGTCGGCCGCTGGTACGTACGTAGGAGATCGA
TCGATGGCGGCGACGATGACGGTGGAGGAGGTGAGGAACGCGCAGCGGGCGGAGGGCCCG
GCCACCGTGCTCGCCATCGGCACGGCGACGCCGGCCAACTGCGTGTACCAGGCCGACTAC
CCCGACTACTACTTCAAGATCACCAAGAGCGACCACATGGCTGACCTCAAGGAGAAGTTC
AAGAGGATGTGTGACAAGTCGCAGATCAGGAAGAGGTATATGCACCTAACGGAGGAGATC
CTTGAGGAGAACCCCAACATGTGCGCCTACATGGCGCCGTCCCTGGACGCGCGCCAGGAC
ATCGTCGTCGTCGAGGTCCCCAAGCTCGGCAAGGCGGCGGCGCAGAAGGCCATCAAGGAG
TGGGGCCAGCCGCGGTCCAAGATCACCCACCTCGTCTTCTGCACCACCTCCGGCGTCGAC
ATGCCGGGGGCCGACTACCAGCTCACCAAGATGCTTGGCCTGCGCCCCTCCGTCAAGCGC
CTCATGATGTACCAGCAGGGCTGCTTCGCCGGCGGCACCGTGCTCCGCCTCGCCAAGGAC
CTCGCCGAGAACAACCGCGGCGCGCGCGTGCTCGTCGTCTGCTCCGAGATCACCGCGGTC
ACCTTCCGTGGCCCGCACGAGTCCCACCTCGACTCGCTGGTGGGCCAGGCGCTCTTCGGC
GACGGCGCGGCCGCGGTGATCATCGGCGCCGACCCCGACTTGTCCGTGGAGCGTCCCCTG
TTCCAGCTGGTGTCCGCGAGCCAGACGATCCTGCCGGACTCGGAGGGCGCCATCGACGGC
CACCTCCGGGAGGTCGGACTCACCTTCCACCTCCTCAAGGACGTGCCGGGGCTCATCTCC
AAGAACATCGAGCGTGCCCTAGAGGAGGCCTTCAAGCCGCTGGGCATCGACGACTGGAAC
TCCGTCTTCTGGATAGCGCACCCAGGCGGCCCGGCGATCCTCGACATGGTCGAGGCCAAG
GTAAACCTGAACAAGGAGCGGATGCGCGCAACCAGGCATGTCCTCTCCGAGTACGGCAAC
ATGTCCAGTGCATGTGTCCTTTTCATCATGGACGAGATGCGCAAGCGCTCTGCCGAGGAT
GGCCACGCCACAACCGGCGAGGGAATGGACTGGGGCGTTCTCTTCGGCTTCGGCCCCGGC
CTCACGGTGGAGACCGTCGTCCTCCACAGCGTCCCCATCAGCGCCGGCGCCACCGCGTGA
TCGCTCTCCTTCTCGACCGTTTATCTTCGTCATGGAAAAACCTACTGCATGCGTACAGCT
TCTTCTATACTACACTGCCGAGTTTGTGCTATATTCTACCGTGCGTGGTTTGTATGTGTT
GGTAGATGAATTCTCTCCTGTTAGTCTGTGTCGCGCACGGCGCCGTCGCATACTACTAGT
AGTAACACAACCGAGCTTTTACAGGTTTATTAAGCAAGTGTGGTCATGATGTGGAGTGTG
AGGTGTATTACCTGTGTACGAAAAGATTGGCTGTTCAATTTGAACCTTATGTGGTTGGAA
AACAAATGGTGATTTAACAAAAAAAAAAAAAAAAAATTATTCTCCTCTTTCCTAAAAAAA
AAAAAAAAAA

Homology of Contig U35_15644 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os11g32650.1	399	protein\|chalcone synthase, putative, expressed
Brachypodium v1_2	Bradi4g17230.1	401
Arabidopsis v10	AT5G13930.1	395	\| Symbols: CHS, TT4, ATCHS \| Chalcone and stilbene synthase family protein \| chr5:4488762-4490035 FORWARD LENGTH=395