barSeed - Barley Seed Development Database

Probe CUST_31902_PI390587928

Source Contig U35_15645

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_31902_PI390587928	Hv_44K_v2	GCTAAGCATACCATGTTTGTTGTTGAGATCGTGGTCGTTTGAACTATTTATTTACGTAAA	872	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_64305.2	1717	2e-24	18 - 77	100	60 / 60	minus	ABC07356 ABC07358 ABC11343
JLOC1	JLOC1_42211.1	1678	8e-25	1560 - 1619	100	60 / 60	plus
Harvest21	ABC11343	976	3e-25	98 - 157	100	60 / 60	minus	ABC11343
Harvest35	U35_47923	545	3e-25	98 - 157	100	60 / 60	minus
Harvest35	U35_15645	992	3e-25	873 - 932	100	60 / 60	plus

Contig Sequence (992 bp)

>U35_15645 992 Hv_44K_v2
TCTTCGCCCGTCCGTGAAGCGCCTCATGATGTATCAACAGGGATGCTTCGCCGGTGGCAC
GGTGCTTCGCCTAGCCAAAGACCTCGCTGAGAACAACCGAGGCGCGCGCGTGCTGGTGGT
CTGCTCGGAGATCACCGCGGTGACCTTCCGCGGCCCGCACGAGTCCCACCTCGACTCACT
CGTGGGCCAGGCGCTCTTTGGTGACGGTGCAGCCGCGGTGATCATCGGCGCAGACCCCGA
CGTGTCCGTCGAACGCCCCCTGTTCCAGTTGGTGTCTGCAAGCCAGACAATTCTGCCAGA
CTCAGAGGGCGCCATCGACGGCCACCTCCGGGAGGTCGGCCTCACCTTCCACCTCCTCAA
GGATGTGCCTGGGCTCATCTCCAAGAACATAGAGCGCGCCCTAGAGGACGCCTTCAAGCC
ATTGGGTATCGATGATTGGAACTCCGTCTTCTGGATAGCGCACCCCGGCGGGCCAGCAAT
CCTTGACATGGTGGAAGCCAAGGTAAACCTGAACAAGGAACGAATGCGCGCCACCAGGCA
TGTCCTTTCTGAATATGGCAACATGTCAAGCGCATGCGTTCTCTTCATCATGGACGAAAT
GCGCAAACGGTCCGCTGAGGATGGGCACACCACAACCGGAGAGGGAATGGACTGGGGAGT
TCTATTCGGCTTTGGTCCCGGCCTCACCGTCGAGACGGTCGTCCTCCATAGCGTCCCCGT
CACTGCCTAGGCCAGCGCATTATCGCTCGTCCTCCATTTATCTTCGTGGTGGAAAAATCT
GCTTTTTGTACTGTATTCTACGGTATGTGGTTTGTACTAGAAGTGTTGGCGTGTTTTGAT
GCTCCGCCTAGGCCATTGCGTTTATCATATGTGCTAAGCATACCATGTTTGTTGTTGAGA
TCGTGGTCGTTTGAACTATTTATTTACGTAAATGAAAGTAACCAATTAGATTTACTATAA
ACCTAGGAATCAATAACTATCGAATTTGGCTA

Homology of Contig U35_15645 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os11g32650.1	399	8e-145	protein\|chalcone synthase, putative, expressed
Brachypodium v1_2	Bradi4g17230.1	401	7e-153
Arabidopsis v10	AT5G13930.1	395	3e-134	\| Symbols: CHS, TT4, ATCHS \| Chalcone and stilbene synthase family protein \| chr5:4488762-4490035 FORWARD LENGTH=395