barSeed - Barley Seed Development Database

Probe CUST_31891_PI390587928

Source Contig U35_27622

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_31891_PI390587928	Hv_44K_v2	TGACAGGGCTTAAAATATTTGTTCCAATCACAATTCTAGCATTTCTTGTTCTCGTTCCTG	562	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK372113	2701	2e-24	476 - 535	100	60 / 60	plus	ABC09725
MLOC	MLOC_16056.1	1025	2e-24	458 - 517	100	60 / 60	minus	None
JLOC1	JLOC1_11038.1	754	8e-25	239 - 298	100	60 / 60	plus
Harvest21	ABC21497	632	3e-25	563 - 622	100	60 / 60	plus
Harvest35	U35_27622	632	3e-25	563 - 622	100	60 / 60	plus

Contig Sequence (632 bp)

>U35_27622 632 Hv_44K_v2
GACGTCTCCCTCCCTCGCCGTTTCCTTTCCAGCCCGACGAAAGGGACGGAGGGGGATAAA
ATCCCAACCCCAACCCCAGGGCGTCGCTGTACTGTCCAGGGAGGGAGCAGCAGCACTTCA
CTTGCAGCGGAAGCGTCGGTGCTACCCGCTCCACTCCGAGACGCCATAGCTATACCGGAA
CGACGGCCAGCTTGCTCCCGGTACCGGTGTTGGTGGAGAGACGAGGAATTCCCAGAAGTT
ATATGAACAACAACTATGGCTACGATCCAAGATATAGGTGTTTCTGCAGCTATCAACATA
CTGAGTGCCGTCATATTCCTGCTAGCATTTGCTTTCCTACGGCTACAGCCCATCAATGAC
AGGGTTTACTTCCCAAAGTGGTATCTGAAAGGTACAAGACAAAGCCCAAGCCATGGGGGT
GCATTTGTACGGAAGTTTGTAAATTTGGACATGCGATCATACTTAAAGTTCTTAAGTTGG
ATGCCTGCTGCTCTCCAAATGCCAGAGGATGAGTTGATTAGCCATGCAGGGCTTGATTCA
GCTGTCTATCTGCGGATCTACTTGACAGGGCTTAAAATATTTGTTCCAATCACAATTCTA
GCATTTCTTGTTCTCGTTCCTGTTAATTGGAC

Homology of Contig U35_27622 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g35050.3	769	1e-71	protein\|early-responsive to dehydration protein-related, putative, expressed
Brachypodium v1_2	Bradi2g40490.3	769	6e-75
Arabidopsis v10	AT1G11960.1	771	1e-59	ERD (early-responsive to dehydration stress) family protein \| chr1:4039871-4043143 REVERSE LENGTH=771