barSeed - Barley Seed Development Database

Probe CUST_3181_PI390587928

Source Contig U35_22944

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3181_PI390587928	Hv_44K_v2	GAATCTTTATTATCCCCTGCTCATGTATGTGGAACATGTTTTTCACTTTCAGTGAGATAT	589	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_64045.1	1670	2e-24	60 - 119	100	60 / 60	minus	ABC20798
JLOC1	JLOC1_42009.1	1650	8e-25	35 - 94	100	60 / 60	minus
Harvest21	ABC20798	691	3e-25	43 - 102	100	60 / 60	minus	ABC20798
Harvest35	U35_22944	691	3e-25	590 - 649	100	60 / 60	plus

Contig Sequence (691 bp)

>U35_22944 691 Hv_44K_v2
CGACGGGCAGAGATACTCTGCTCATCGCTGTGTCGTTGCTGCCCGGTCGTCTGTCTTCAA
GGCGGAGCTCCTCGGCGCCATGGAGGAGAGTTCCGGTAGTACCATTGTCATCCGTGACAT
GGAAGCTGATGTGTTCGAGTCCTTGCTCCATTTCATGTACACCGACTCGGTTCCTCCGGT
GCTTGATGTGGTGATGGCTGGCCATCTACTTGTCGCGGCTGACAGGTACAACATCGGTAG
GCTGAAGGTGATATGCGAGGACAAATTGTGCAGTCACATTGATTCCAACATGGTGGCTAC
CAGCTTGGCTTTGGCTGAGCAACATGGTTTCCGTCGTCTCAAAGAAGCTTGTTTGCAGTT
CCTTGCTTCTCCGTCCAATTTGGATGCTATGATGTCAAGTGATGGGTATGAGCATCTGAA
ATCCAGCTGCCCCGCAGTTCTTAAGGAGCTGATAGCTAGAATCATCCCGGCTGAATTTAC
ATCAGCAAAGGATATTATCATGACAATGTGGAAGTAATGCTTTCCGTACCATTATTATAC
TCCAAATTTTAGTACCAAATGATATTATGCTACATCTCGGTTTGGAGTAGAATCTTTATT
ATCCCCTGCTCATGTATGTGGAACATGTTTTTCACTTTCAGTGAGATATTAATGAAATTC
AATGGATTTCGGTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_22944 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g20600.1	236	1e-67	protein\|BTB/POZ domain containing protein, putative, expressed
Brachypodium v1_2	Bradi4g23767.1	190	9e-79
Arabidopsis v10	None