barSeed - Barley Seed Development Database

Probe CUST_31806_PI390587928

Source Contig U35_15674

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_31806_PI390587928	Hv_44K_v2	CCCCGTGGAATCTTTCATTGTAAAAAACCACGATGATGATGATGAAAATTTCCTTTTACT	434	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK355456	574	7e-23	513 - 572	98	59 / 60	plus	ABC03512 ABC03514 ABC03515 ABC11923 ABC14284 ABC17317
MLOC	MLOC_32357.1	426	7e-23	213 - 272	98	59 / 60	minus	None
JLOC1	JLOC1_21123.1	361	4e-23	144 - 203	98	59 / 60	minus
Harvest21	ABC03512	518	3e-25	435 - 494	100	60 / 60	plus	ABC03512
Harvest35	U35_15674	518	3e-25	435 - 494	100	60 / 60	plus

Contig Sequence (518 bp)

>U35_15674 518 Hv_44K_v2
CATCAATTCAGTGAGATAGTTCAAGAAAACCAGCTCTGTTCTTTCAGTAGCGCAACTTCG
CAAGTCCACTAGAACAAGGGGAAGAGATGGCTTCTCCGGCCAAGGCATCGTGGATGGTGG
CGATGAGTGTCGGCGCCGTGGAGGCGCTCAAGGACCAGGCCGGCCTCTGCCGCTGGAACT
ATGCTCTCAAGTCCATCCACCGGGCAGCCAAGGCCAGGGCCAACGTCCGTGGCGGCGTCT
CACAGGGTGCCAAGCAGCTTCCGCCCTCTGCTGCGGCGGTGGCGGAGAAGCGGCGAGCGG
AGAAGGCCGAGGAGGGGCTGAGGACGGTGATGTACCTCAGCTGCTGGGGTCCAAATTAGC
ACTAGCTGTGATTACTAGTTAGGTGGAGGTGTTCGTGTTTGCTGCAACAACCATGGCCTG
AAACCGGCTGGCTTCCCCGTGGAATCTTTCATTGTAAAAAACCACGATGATGATGATGAA
AATTTCCTTTTACTTCGGTTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_15674 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None