- Probe CUST_31755_PI390587928
- Source Contig U35_44908
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_31755_PI390587928 | Hv_44K_v2 | AGCCTTATCAGCGTGTCAATTGTCATCTCGATTCCTATATATGATTGGATACTTGTTCCG | 261 | GeneList: turquoise MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.283 | 1.050 | 1.061 | 1.105 | 0.567 | 0.475 |
| Raw | 17.471 | 20.785 | 19.689 | 34.248 | 4.482 | 4.599 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK365159 | 2139 | 2e-24 | 1135 - 1194 | 100 | 60 / 60 | plus | ABC20479 ABC21055 ABC38117 |
| MLOC | MLOC_44794.1 | 1389 | 2e-24 | 1055 - 1114 | 100 | 60 / 60 | minus | ABC21055 ABC38117 |
| MLOC | MLOC_44794.5 | 1017 | 2e-24 | 64 - 123 | 100 | 60 / 60 | minus | ABC20479 ABC21055 |
| MLOC | MLOC_44794.2 | 2169 | 2e-24 | 992 - 1051 | 100 | 60 / 60 | minus | ABC20479 ABC21055 ABC38117 |
| MLOC | MLOC_44794.3 | 1894 | 2e-24 | 847 - 906 | 100 | 60 / 60 | minus | ABC20479 ABC21055 ABC38117 |
| MLOC | MLOC_44794.4 | 2103 | 2e-24 | 847 - 906 | 100 | 60 / 60 | minus | ABC20479 ABC21055 ABC38117 |
| Harvest21 | ABC43157 | 524 | 3e-25 | 262 - 321 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_44908 | 524 | 3e-25 | 262 - 321 | 100 | 60 / 60 | plus |
Contig Sequence (524 bp)
>U35_44908 524 Hv_44K_v2 GCGCACACTATGTATTTGTTTGGCAGGTCATCTGATGATTCTCACCGCATGCCAACACCA TCGTCCAGCAGTGTCAAGGATATTATAGGAATGACATGTTTCCCTGATGAAGCCAAGTCT GTGCTTAAGTTGTTTCCAATAGGGGCAACATGCCTGATCTATGCAGTTGTTTTTGCCCAG TGGATGACGCTGTTCACTAAACAAGCAAGTACACTAGATAGACGGATAGGTAGCCTAGAG GTACCAGCTGCTGCGCTACAAAGCCTTATCAGCGTGTCAATTGTCATCTCGATTCCTATA TATGATTGGATACTTGTTCCGCTAGCCAGAAAATACTCGAAGAACCCTTGTGGTATCACA ACCTTGCAAAGGATTGGAACTGGACTAGTCATCTCGGTGATCTTGATGGTTGTCGCGGCC CTCGTGGAGATGAGAAGGCTCANGATAGCGAGAGAACATGGCCTAGTGGACAAACCTGAA GCGACAATTCCTATGAGCTTTTGGTGGGTGGTACCTCAGTTCAT
Homology of Contig U35_44908 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os01g65200.3 | 549 | 1e-69 | protein|proton-dependent oligopeptide transport, putative, expressed |
| Brachypodium v1_2 | Bradi2g56387.2 | 551 | 6e-80 | |
| Arabidopsis v10 | None |