barSeed - Barley Seed Development Database

Probe CUST_31747_PI390587928

Source Contig U35_20956

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_31747_PI390587928	Hv_44K_v2	TCCCCGGAAAATGGTTAAAACCTGGGCTGAAAAGGAAATGAGAAATCTTAAACAGTGGGA	1098	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.443	1.464	1.291	0.825	0.365	0.346
Raw	90.053	140.530	112.376	113.934	17.323	18.026

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC16646	1534	3e-25	1099 - 1158	100	60 / 60	plus	ABC16646
Harvest35	U35_20956	1534	3e-25	1099 - 1158	100	60 / 60	plus

Contig Sequence (1534 bp)

>U35_20956 1534 Hv_44K_v2
GTTCGTGGACTCGGCGACGGGGGAGCGGGAGCGAGGGGACTCGGCGGCGCGGTGAACGAG
AAGGAGGCAACCAGGAGACCGACGCCAAGCCGACGACCAGGGCGGACACCAGCTCAATCT
CCGGTCATTTCTTCCTCTGGCTTTGAACAACCTTGCGAGTGTTTATGTGGATTGCGGGAA
TCTAGACTTGGCAGCTGAATGCTACATTAATGCGCAGCTTGCAGCTTGCTCGCGAGCATG
CAACAAGCCAGCATGAATGACTTGTTTATGAAGGATGGATACTGTATGATACTGGCCACT
GCGAGGAAGGATTGCAGAAAGCGGAAGCATTCATTGCCATACAGAGATCATTTGAGGCGT
TCTTTCTAAAAGCTTATGCTTTAGCTGATTCGAGCCTCGAGCCGTCAACCTCAGCAACAG
TCGTATCGCTTCTTGAAGATGCATTACGGTGCCCCTCAGATAGACTTAGGAAGGGCCAGC
ACAACTTGATCCAAGTTTATATAAATGCTGAAATGAGTGCTCTGGAGCAATCGATTCACA
AGTATGGAGAGGACACACAGTAGTGGCATCGACCCAGATCCGGAGTCAAGCAGGTGAGCA
CACACAGTGAAGGTGTTGTTCCATCTCTCTGATGGCTCCTGGACATATTGTCGGCGGCCT
AGCAGATCGGAGCTCATCGGCAACGAAGCTCCGCCCAGAAGTGTGCTTCTCGCAGCAGCC
CCCCTACGGCGATACGGAGTGGGAAGGTCGAATGAACGTGGGTATGTCAAATTCGGTAGC
GACTGCAATCAGGGACAGCATAAGGGATACATCAATTGGCAAAATAAGGAACCATGAGAA
GGCCGATCGTGCTACGGTGGAACAGGCCATTGACCCAAGGACACGCATGGTTTTGTTCAA
GATGTTGAATAGTGGTGTTTTTAATAATATAAGTGGCTGCATTTCTACAGAAAAAGAGGG
AAATGTCTATCATGCAACAAAAATAGATGGCCAGGAGCTAGCAATCAAAGTCTATAAAAC
CTCTGTCCTTGTCTTTAAGGATAGAGACAGATATGTTCAAGGAGATTATCGTTTTAGATA
TGGTTACTGCAAGCATAATCCCCGGAAAATGGTTAAAACCTGGGCTGAAAAGGAAATGAG
AAATCTTAAACAGTGGGATATAATTTTCATACCTTATTCATAATTTCATATTGCTGTTAT
TAAAATATCTATGATTAATTTCAGGCATTTGTAGAATCATTAGGAATGAATTTTCTTGCG
AATTATGCTAAGGAATCCATCAATGTGGAGAGAACTTTTAATGTGGAGAGAACTTTCTTA
AATATGTCATCAGAAATCAAGAAAAAAGTAACCAGGAACTTCACACTTTTAGAGGCCCTT
TTTCTTCTCAGTTTCTCTGAAGTGGCGGCGGGGAAGCGGCCCTCGATCGGGGCCATGGTC
CTCTCTCGGCGGGCAAGGAACAACGGCGGCCAGGGACTTGCCCAACTCCCGCACCGGAAT
ACATGAAAATTTAAACTTTCAATAAATTTATCAT

Homology of Contig U35_20956 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g06820.1	570	7e-76	protein\|serine/threonine-protein kinase RIO-like, putative, expressed
Brachypodium v1_2	Bradi3g41230.2	560	3e-75
Arabidopsis v10	AT5G37350.1	531	8e-73	Serine/threonine-protein kinase Rio1 \| chr5:14793037-14795828 FORWARD LENGTH=531