barSeed - Barley Seed Development Database

Probe CUST_31688_PI390587928

Source Contig U35_17602

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_31688_PI390587928	Hv_44K_v2	CTTACAACATCTCTCATATTGACTGTTGGTTCTCCAGCTATGTGGACTTATGGGGCTTTC	438	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_58075.1	404	3e-22	242 - 300	98	59 / 60	plus	ABC17988
JLOC1	JLOC1_37701.1	403	1e-22	242 - 300	98	59 / 60	plus
Harvest21	ABC28293	555	5e-23	439 - 497	98	59 / 60	plus
Harvest35	U35_17602	1191	3e-25	439 - 498	100	60 / 60	plus

Contig Sequence (1191 bp)

>U35_17602 1191 Hv_44K_v2
GCGGGAGATTGGTTGCTGGCATCGGATGGCGGGAGGCGCTAGGGATCGTGGGAGGAGCAG
GTAGCTCTAGCCTGTCGTCGGTGGAAGCTTGACCGCTAGGATGCAGGAAGAGGGTGGGAG
CGTGGTGCGCGATTGGAGGCGGAGCAGGCTGTCTTGCGGTTTAGCATCCACGAAGTGTCC
GAGGCTGCAACATGCCAACACCCTTTGGTGTATAGGCAACCGCTGGAATGGAGAGAGACC
TGAGCGGAAGGGGTATGGGATCGACTCTGCCATGGGCATGTTGTCCGCCGCTGCAGGCGG
GGACTACGGTGGGGCCGTGGGGGGTCGATTTGACGTGGATTGGATCGTTAACCATGGGAT
GGGGACCAGAGAATTTGGGAACTACGTTTGGATAATTGATCCTCAATTTAGCTTCTTTGT
TTGCACAGTTGAATTAAGCTTACAACATCTCTCATATTGACTGTTGGTTCTCCAGCTATG
TGGACTTATGGGGCTTTCTGGAAGGTGCCTTGCTTTGACTGTTGGTTTACATGGGGTTTC
TTCTCTTGACTTCATCTTTCCTGATTTGCTTTGAACATTGCACTTCCTAGACATTGTTTT
CTCTGGCCTTGGTAACTACATGTCCTTCCAGATATTTACATCGATGAGAGATAATATAGT
TTGCTATCTGGAACTGGTGTTTCCCTAACTGATAGCAGATATTTACATGGATGAGAGATA
ATATAGTTTGCTATCTGGAACTGGTGTTTCCCTAACTGATATCTCCCAGCCAAGTCCTAA
CTGACGATTTAGGTCCAACCTGATGATGAATTGGATTGGTGGATGTAGAAGGTTCGAAGG
TTGCTGCAGGGCATCAATCTAGACGGGCCATCCTACAACCGAAAAAACCCAGTGCTCTCT
ATTTGATCTCTTGAAGAAGCTTCTGTTGTCTTAGATGCTTTGTGCTTGTAGCATTGATTG
TGTTTTTTTGCTTCCGCCTTCTTGTGGTTGCAGATTGTTTAGCCCAAGCTATGCTGGTAG
CCATCAAAATATGTCGTATTTTTGGTTTCTGATCCTCTCCTGACTTCTATAGTTGGGTAA
TGTTGATGGCTTGATACGCAGAAAGAGGTTAGGGATTATTGCTATATATACAAAAAAAAT
GGAGAGTTGAAGCTTCTCGACTCGAAGCTTGAACAAAAAAAAAAAAAAAAA

Homology of Contig U35_17602 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None