barSeed - Barley Seed Development Database

Probe CUST_31668_PI390587928

Source Contig U35_17616

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_31668_PI390587928	Hv_44K_v2	GTATCGATCTCTACTGGTAGTAAGTTTGTTTGATTGATCCGAGCTACTTTATGTTATCTT	1655	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK368527	1939	2e-24	1811 - 1870	100	60 / 60	plus	ABC09320 ABC22536 ABC42695
MLOC	AK367303	2071	2e-24	1991 - 2050	100	60 / 60	plus	ABC09320 ABC22536 ABC42695
MLOC	MLOC_34835.1	1338	2e-24	32 - 91	100	60 / 60	minus	ABC09320 ABC22536 ABC42695
MLOC	MLOC_34835.2	1553	2e-24	32 - 91	100	60 / 60	minus	ABC09320 ABC22536 ABC42695
JLOC1	JLOC1_22502.1	1646	8e-25	1465 - 1524	100	60 / 60	plus
Harvest21	ABC09320	1543	3e-25	1402 - 1461	100	60 / 60	plus	ABC09320
Harvest21	ABC42695	381	1e-23	36 - 95	98	59 / 60	minus	ABC42695
Harvest35	U35_17616	1799	3e-25	1656 - 1715	100	60 / 60	plus

Contig Sequence (1799 bp)

>U35_17616 1799 Hv_44K_v2
TCGAGCACTGTTGGCCTATGGATTCACTCGCATTCCATCAACCGTACTCTAGACATTAGC
GGTACGTGTTACAAGTTACAAGGTCGACTAGCAAAGTGTCAAGAGCAATGACGGAACGTA
GCAGGGCCTTTACATTTTCCCTCCTGGTGCTCAAGGACCTGATCCAGGCGGCCGCCGCGG
CGGGGCTCGCGCTGCCGCACTCGCCCTACTGGTACGGACTCACCATCGGGGGCCTCCTCG
CAACGGGTGCCCACGGCAGCTCGCTGCGGGGCAAGGGCAGCGCCGTGCATGAGTACGTAG
TAGGGATGAGGATCGTAACGCCTGCACCGGCCAGCCAGGGATTTGCCGTGGTCAGGGAGC
TCAGCATCGGGGACCCTGACCTCGACGCGGTCAAGGTCTCCCTCGGCGTCCTCGGCGTCG
TGTCCCAGGTTACGCTAGCCTTGCAGCCGATGTTCAAGCGGTCGGTGACGTTTGAGAAGC
GCGACGACACAGACTTCGCGTCGCAGGCGGCCATGTGGGGCGGGCTGTACGAGTTCGGTG
ACATGGCGTGGCTCCCGCGACAAGGCAAGGTGATCTACCGCAAGGACGATCGCGTACCCG
TCTCCACCAAGGGCAACGGCCTCAACGACTATCTCGGCTTTCGCTCCAACCCGACGCTCG
CGCTCATCACCGCCAGAGCCACGGAGGAGCACCTGCAGAAGGACGGCAGCAACATCGCCA
GGTGTCTTGCGGCGCGGGCGCCATCCGTGCTTTTCGAGCTGCAGGCCTACGGCTTCACCA
ACGACGGCTCATTCTTCACGGGGTGGCCCGTGGTGGGGTTCCAGAACCGCATCCAGGCAT
CCGGGACCTGCATCAGCAGCCCGGAGGACGGGCTCCTATCCTCCTGCACGTGGGACCCGC
GCATCCGGAGCCCCTTCTTCTACAACTCCGGCTTCAGCGTGGCGCTCTCCAAGGCGCCGG
CCTTCATCGCTGAGATGCAGAAGCTCCGCGACCTCAAGCCGCGCGCCTTCTGCGGCCTCG
ACGCCAAGCTCGGCGTGCTCCTCCGCTACGTCAGAGCCTCTTCCGCTTACCTCGGGAAAT
CCGAGGACTCGATCGACTTCGACGTCACCTACTACCGGAGCTACACTGAAGGTGAGCCGC
GCGCGGATTCCGACGTGGTCGACGAGATCGAGCAGCTGGCGCTGCGCAAGTATGGCGCCG
TCCCACACTGGGGCAAGAACCGTAACTTTGTCTTCGACGGCGTCATAGCCAAGTACCCCA
AGGCTGCTGAGTTCCTCAAGGTGAAGGCCAGGTACGATCCCGACGGGATCTTCTCCAGCG
AGTGGAGCGACCAGGTGCTCGGCGTCAAAGGGAGCCCCAACATCGTCCAGAAGGGATGCG
CCATTGAAGGGCTCTGCGTCTGCTCCGAGGACTCGCACTGCGCGCCGGAGAAGGGCTACT
TCTGCCGGCCGGGGACGGTGTTTCCGGAGGCGAGAGTATGCTCGACCCGAGCCAGTTTCG
GCGACGAAAGCGACGACCTTCTGGAGGAACAGTGATTCGAGGTGCATGCATGCATGCATG
CGCCGGGTCAAGCGGCAGCGCATCTAAGTTTAGATTGCGATGCTGACTTTAATGTTGCTT
GTACGTGGCGTGTTTAATTTCTTCCAGAGATTGGAGTATCGATCTCTACTGGTAGTAAGT
TTGTTTGATTGATCCGAGCTACTTTATGTTATCTTATTATGGTTTGGTTATTGTTCTGAT
TGGAAGCAATTGAAATTCAAACTAAACGCCATGTTTACTTAAAAAAAAAAAAAAAAAAA

Homology of Contig U35_17616 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g02230.1	590	0.0	protein\|FAD-binding and arabino-lactone oxidase domains containing protein, putative, expressed
Brachypodium v1_2	Bradi3g13700.1	590	0.0
Arabidopsis v10	AT2G46750.1	591	3e-148	D-arabinono-1,4-lactone oxidase family protein \| chr2:19208443-19210909 REVERSE LENGTH=591