barSeed - Barley Seed Development Database

Probe CUST_31571_PI390587928

Source Contig U35_16096

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_31571_PI390587928	Hv_44K_v2	CTACCATGTTCTTTAGCCCTTGCACAATTTATAGAGAAAAACGTTACAGTTTACGCCAAA	905	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_73817.2	2227	2e-23	2060 - 2117	100	58 / 58	plus	ABC05573
MLOC	AK360567	2024	3e-21	810 - 863	100	54 / 54	plus	ABC05573 ABC12765
JLOC1	JLOC1_49157.1	1158	1e-23	941 - 998	100	58 / 58	plus
Harvest21	ABC05573	977	3e-25	906 - 965	100	60 / 60	plus	ABC05573
Harvest35	U35_16096	1158	3e-25	906 - 965	100	60 / 60	plus

Contig Sequence (1158 bp)

>U35_16096 1158 Hv_44K_v2
CGGGCTGAGGAATTCGGACGAGGGCGGCTGCCCCCCCTGCCAGCCTCTCCCCCCTTCTTC
TGTGGATAAAGGATAAGAAACCTGCACCGGAACAAGAAGAAGCGTGCACACCGAGCAAGC
GGCGGCAACACCGAGCCCGTCCATGGCGTCCCTCTCCCCCTCCCTCCACCTCCCTTGCAA
TTCAAGAACTGGCTTCCTTGGGAAGTCACGAGGCATACATCTTCGTGTTATCCCTGCTGG
CAGAGTTGGTTTCGTTAGAAAAACAGTGGAATGCAAGGAGTCTAGAATCGGAAAGAAGCC
GATTGAAGTTCCATCAAATGTTACTCTAACACTAGAGGAGCAGTTTGTCAAAGCTAAGGG
TCCGCTCGGAGAATTGTCATTAAACTATCCCACCGAAGTAAAAGTTGTGAAAGAAGAAAC
TGGCAAATTGAGAGTATTCAAGACTGTGGAAACCAAACGGGCGAATCAGATGCATGGCCT
TTTCAGAACCCTGACAGACAACATCATCGTGGGCGTGTCAAAGGGATTTGACAAGAGGCT
TCAGTTAGTGGGGGTTGGGTACCGTGCGACAGTGGAGGGCAAAGACCTGGTGATGAACCT
GGGATTCTCGCACCCTGTCCGGATGGCTGTCCCAGAAGGACTTCAAGTGAAGGTGGAGGA
GAACACGAGAATCATCGTGAGTGGGTACGACAAGAGCGAAATCGGTCAGTTTGCGGCCAC
CATAAAGAAATGGAGGCCTCCGGAGCCATACAAGGGGAAGGGTATCCGGTACCAGGACGA
GATTGTCAGAAGGAAGGAGGGCAAAGCTGGGAAGAAGAAATAGAAGTCTGTTTATTTGTT
TGTTTGCATTCCATACGTACTACTTTTGTTCCGTTTTCCCTCTGCAATCCACCATCTTCT
GAGTACTACCATGTTCTTTAGCCCTTGCACAATTTATAGAGAAAAACGTTACAGTTTACG
CCAAAAAAAAAAAAAAACGCAGGTTGCTAGGATGGCCTCACGGGCACCACAGTACGCCTC
CTAGCCAAGACGATGGATAGGTCAGTATACATGCTTTATGACCGATTGATTCATCCATTG
TAAGAAAGAGTGGCTCAGTGTAAAGTTGGTTCCCATTGTCGTCGATGTGTGCGCTTACTG
CTGTGCATTGTTGACCTT

Homology of Contig U35_16096 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g24020.1	227	5e-133	protein\|ribosomal protein L6, putative, expressed
Brachypodium v1_2	Bradi1g62170.1	227	4e-140
Arabidopsis v10	AT1G05190.1	223	7e-102	\| Symbols: emb2394 \| Ribosomal protein L6 family \| chr1:1502515-1503738 REVERSE LENGTH=223