- Probe CUST_31496_PI390587928
- Source Contig U35_27870
Probe Details
Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
---|---|---|---|---|
CUST_31496_PI390587928 | Hv_44K_v2 | CTGCTTGTGTTCTGCTTTCTCAAGTTGAGATGAGTTCATTGAGTGGGTTTCTCCCCCAAA | 303 | GeneList: None MasterList: None |
Probe Values
This probe has no recorded values for this experimentProbe Sequence's BLAST hits in Barley Unigene Datasets
Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
---|---|---|---|---|---|---|---|---|
MLOC | MLOC_15667.1 | 1390 | 3e-21 | 1044 - 1103 | 97 | 58 / 60 | plus | ABC02468 ABC31761 |
JLOC1 | JLOC1_10757.1 | 1194 | 2e-21 | 980 - 1039 | 97 | 58 / 60 | plus | |
Harvest21 | ABC31761 | 358 | 2e-22 | 15 - 72 | 98 | 57 / 58 | minus | ABC31761 |
Harvest21 | ABC02468 | 787 | 6e-22 | 671 - 730 | 97 | 58 / 60 | plus | ABC02468 |
Harvest35 | U35_27870 | 377 | 3e-25 | 304 - 363 | 100 | 60 / 60 | plus | |
Harvest35 | U35_15036 | 794 | 6e-22 | 675 - 734 | 97 | 58 / 60 | plus |
Contig Sequence (377 bp)
>U35_27870 377 Hv_44K_v2 GGCGAATTGGGCCCTTCAGAAGATGCTCGAGCGGCCGCTCACTCCGCAGATCAAGGAGAG GAAGAACAGGACAAAGAAGATCCGTGGAGTCAAGAAGACAAAGGCTGGGGATGCCAAGAA GAAATGAGGAAAGATTCTTGACTGTTGGCTGCTTTCAGTTCTATCTGTTCACAATCAGTG TCTGTACCCTTTAGTAAAGCTCTTTGTGGCAATGTCGCAGTATGCTTGATTTAGTAGAAA AGTGAATTTTGAGCTTTTACATCGTCCCCGGTATGCTGGTTAGTATTACTGACTTGATTT TTGCTGCTTGTGTTCTGCTTTCTCAAGTTGAGATGAGTTCATTGAGTGGGTTTCTCCCCC AAAAAAAAAAAAAAAAA
Homology of Contig U35_27870 to Model Species (E-value threshold 1e-50)
Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
---|---|---|---|---|
Rice v7 | None | |||
Brachypodium v1_2 | None | |||
Arabidopsis v10 | None |