- Probe CUST_31451_PI390587928
- Source Contig U35_39877
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_31451_PI390587928 | Hv_44K_v2 | ATGCCTGAAAATACTGATAAAAAAGGTACCTACAAAGAGGAAAAGGGTTCTGACAGGTAT | 576 | GeneList: blue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.873 | 1.801 | 1.296 | 0.616 | 0.390 | 0.443 |
| Raw | 100.562 | 138.851 | 92.278 | 63.200 | 15.275 | 19.338 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_22342.20 | 3166 | 2e-24 | 1653 - 1712 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_22342.9 | 2289 | 2e-24 | 1800 - 1859 | 100 | 60 / 60 | plus | ABC20714 |
| MLOC | MLOC_22342.10 | 3103 | 2e-24 | 2612 - 2671 | 100 | 60 / 60 | plus | ABC20714 |
| MLOC | MLOC_22342.4 | 3448 | 2e-24 | 1963 - 2022 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_22342.5 | 4336 | 2e-24 | 2851 - 2910 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_22342.22 | 2916 | 2e-24 | 812 - 871 | 100 | 60 / 60 | plus | ABC20714 |
| MLOC | MLOC_22342.3 | 4469 | 2e-24 | 3455 - 3514 | 100 | 60 / 60 | plus | ABC20714 |
| MLOC | MLOC_22342.14 | 3178 | 2e-24 | 2122 - 2181 | 100 | 60 / 60 | plus | ABC20714 |
| MLOC | MLOC_22342.15 | 3535 | 2e-24 | 2039 - 2098 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_22342.16 | 3765 | 2e-24 | 3265 - 3324 | 100 | 60 / 60 | plus | ABC20714 |
| MLOC | MLOC_22342.13 | 3153 | 2e-24 | 2636 - 2695 | 100 | 60 / 60 | plus | ABC20714 |
| MLOC | MLOC_22342.21 | 2633 | 2e-24 | 1722 - 1781 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_22342.11 | 3098 | 2e-24 | 1631 - 1690 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_22342.12 | 3294 | 2e-24 | 2823 - 2882 | 100 | 60 / 60 | plus | ABC20714 |
| MLOC | MLOC_22342.19 | 3965 | 2e-24 | 2325 - 2384 | 100 | 60 / 60 | plus | ABC20714 |
| MLOC | MLOC_22342.18 | 2298 | 2e-24 | 1654 - 1713 | 100 | 60 / 60 | plus | ABC20714 |
| MLOC | MLOC_22342.17 | 2652 | 2e-24 | 2008 - 2067 | 100 | 60 / 60 | plus | ABC20714 |
| MLOC | MLOC_22342.6 | 2657 | 2e-24 | 2157 - 2216 | 100 | 60 / 60 | plus | ABC20714 |
| MLOC | MLOC_22342.7 | 3307 | 2e-24 | 2807 - 2866 | 100 | 60 / 60 | plus | ABC20714 |
| MLOC | MLOC_22342.8 | 3252 | 2e-24 | 2752 - 2811 | 100 | 60 / 60 | plus | ABC20714 |
| MLOC | MLOC_22342.1 | 2578 | 2e-24 | 2035 - 2094 | 100 | 60 / 60 | plus | ABC20714 |
| MLOC | MLOC_22342.2 | 3685 | 2e-24 | 2146 - 2205 | 100 | 60 / 60 | plus | None |
| JLOC1 | JLOC1_15488.27 | 4021 | 8e-25 | 2459 - 2518 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_15488.26 | 4544 | 8e-25 | 2542 - 2601 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_15488.25 | 4370 | 8e-25 | 2368 - 2427 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_15488.24 | 3413 | 8e-25 | 2407 - 2466 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_15488.23 | 2449 | 8e-25 | 1512 - 1571 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_15488.22 | 3074 | 8e-25 | 1512 - 1571 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_15488.21 | 3883 | 8e-25 | 1881 - 1940 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_15488.20 | 4022 | 8e-25 | 2576 - 2635 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_15488.19 | 3713 | 8e-25 | 2707 - 2766 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_15488.18 | 2582 | 8e-25 | 1645 - 1704 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_15488.17 | 3969 | 8e-25 | 1967 - 2026 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_15488.16 | 2625 | 8e-25 | 1619 - 1678 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_15488.15 | 3011 | 8e-25 | 2005 - 2064 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_15488.14 | 4046 | 8e-25 | 2600 - 2659 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_15488.13 | 2948 | 8e-25 | 1942 - 2001 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_15488.12 | 2692 | 8e-25 | 1686 - 1745 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_15488.11 | 3598 | 8e-25 | 2036 - 2095 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_15488.10 | 4038 | 8e-25 | 2036 - 2095 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_15488.9 | 3975 | 8e-25 | 1973 - 2032 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_15488.8 | 3535 | 8e-25 | 1973 - 2032 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_15488.7 | 4607 | 8e-25 | 2605 - 2664 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_15488.6 | 3044 | 8e-25 | 2038 - 2097 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_15488.5 | 3613 | 8e-25 | 2607 - 2666 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_15488.4 | 2997 | 8e-25 | 1991 - 2050 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_15488.3 | 3655 | 8e-25 | 2649 - 2708 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_15488.2 | 3654 | 8e-25 | 1652 - 1711 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_15488.1 | 4779 | 8e-25 | 2777 - 2836 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC36118 | 641 | 3e-25 | 577 - 636 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC27190 | 644 | 3e-25 | 553 - 612 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_39877 | 641 | 3e-25 | 577 - 636 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_28364 | 644 | 3e-25 | 553 - 612 | 100 | 60 / 60 | plus |
Contig Sequence (641 bp)
>U35_39877 641 Hv_44K_v2 GCACAAGGGCTGAAATTAAAGTTGGTGCAGCACTTCCTAAAGAAAGTAAGTTCATGAAAA ACACAAAGAGGACTTGGTTTCCCAGAATTTATTTTCTAAATAAAGAAGAGCTTATTATTA ACTTTGATTGATACATAATCACATTTAGGTGAGAAGAACATTGATGGCGCACTGCACAAT AATAGTAACGGAAGTATTGCTTCACTCCAAAGTGTTTCATCAGGAGATGATCATAAATCC AGTGATGAAAGATCTCAGAGTAGGCCAACTGCAGAATCTGAACGAGAGCCAAGTATTCAT GACACACAGAATGGAGAAGCCAAAACTTCTATTCAGCCAATTGGTGTGATTCATAAAACA AATGAGAAGGCACATGGTCATGCAGAGGTGGATTTCCAGAATGGGAAAACCTCTTCCGTC CATCATACTGAAAATAATAATAATAATGCGGAGAGCACTCACAGGCATTTTGAAAGGAAA AGTCACGAGAAAGATCTTAAAGAGCCGAAGGTTGTCAATGGAATAGACTCTGAGCCTTCT AGAACTGATAAGTTTAGAGATGGTGACAAGCATAGCATGCCTGAAAATACTGATAAAAAA GGTACCTACAAAGAGGAAAAGGGTTCTGACAGGTATGCAAA
Homology of Contig U35_39877 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | Bradi5g24937.1 | 904 | 4e-52 | |
| Arabidopsis v10 | None |