barSeed - Barley Seed Development Database

Probe CUST_313_PI390587928

Source Contig U35_32025

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_313_PI390587928	Hv_44K_v2	TGCTGTTGATGCGAGATTCCCAATAATGGCATCGCGCAGCGCCGCGCTCTGCTTCTCCGC	120	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK358698	1177	2e-24	123 - 182	100	60 / 60	plus	ABC22222
MLOC	MLOC_60701.1	3256	2e-24	3091 - 3150	100	60 / 60	plus	ABC19146
MLOC	MLOC_60701.2	3005	2e-24	2840 - 2899	100	60 / 60	plus	ABC19146
JLOC1	JLOC1_39611.1	532	8e-25	368 - 427	100	60 / 60	plus
Harvest21	ABC46268	377	3e-25	181 - 240	100	60 / 60	plus
Harvest21	ABC18932	618	3e-25	182 - 241	100	60 / 60	plus
Harvest35	U35_32025	466	3e-25	121 - 180	100	60 / 60	plus
Harvest35	U35_19354	1286	3e-25	203 - 262	100	60 / 60	plus

Contig Sequence (466 bp)

>U35_32025 466 Hv_44K_v2
GTGCCAAGCACGCGGCACCACCAGCCACCGGAGGAGGAAGGCAAGGAGCTTCGCCGGCCG
GCTGCCGGAGCAGCAACAGCAGCAGGAGTCGGCTGCGGGATGCCACGGCGAGCAGGAGCT
TGCTGTTGATGCGAGATTCCCAATAATGGCATCGCGCAGCGCCGCGCTCTGCTTCTCCGC
CGCCGTCACCACCACCACGGCCACCGGCGGCAGTGGCAGGGGCCGGAGCCGTAGGCGCGT
CTTGGTCGTCTGCTGCGACGGCGGCCGGAGATCTGACCTGCTCTCTTCCTCCCTCGCGGC
CAAGGTGCTGGGCGCGCCGACGACCTTCGACGCGGCGAAGCTGACGGTGCAGCACGCCGG
CGCCGGCGAGTCGTTCCCGAGGGCCTACACGCTGAGCCACTGCGACTTCACGGCGAACCT
GACGCTGGCGGTGTCCGAGACCATCACGAGCGAGCAGCTGCGGCGG

Homology of Contig U35_32025 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None