barSeed - Barley Seed Development Database

Probe CUST_31196_PI390587928

Source Contig U35_39280

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_31196_PI390587928	Hv_44K_v2	TCACAGATGAACAATTCGCCACTCAAGTTTACAATACACACTGACAACCGCCTCAAAAAG	22	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_76000.8	2705	6e-24	2633 - 2691	100	59 / 59	minus	ABC01424
MLOC	MLOC_76000.3	3082	6e-24	3010 - 3068	100	59 / 59	minus	ABC01424
JLOC1	JLOC1_50693.3	2884	3e-24	2555 - 2613	100	59 / 59	minus
JLOC1	JLOC1_50693.2	2863	3e-24	2534 - 2592	100	59 / 59	minus
JLOC1	JLOC1_50693.1	3092	3e-24	2763 - 2821	100	59 / 59	minus
Harvest21	ABC35346	461	3e-25	23 - 82	100	60 / 60	plus
Harvest21	ABC46337	376	1e-24	62 - 120	100	59 / 59	plus
Harvest21	ABC01427	712	1e-24	49 - 107	100	59 / 59	plus
Harvest21	ABC01423	1767	1e-24	1638 - 1696	100	59 / 59	minus
Harvest21	ABC01421	752	1e-24	67 - 125	100	59 / 59	plus
Harvest21	ABC01426	2663	4e-24	2524 - 2581	100	58 / 58	minus
Harvest21	ABC50409	311	5e-23	39 - 97	98	58 / 59	plus
Harvest35	U35_39280	461	3e-25	23 - 82	100	60 / 60	plus
Harvest35	U35_48180	173	1e-24	77 - 135	100	59 / 59	plus
Harvest35	U35_14376	2659	1e-24	2535 - 2593	100	59 / 59	minus

Contig Sequence (461 bp)

>U35_39280 461 Hv_44K_v2
TACGTTACGGTTTCAAACTCAGTCACAGATGAACAATTCGCCACTCAAGTTTACAATACA
CACTGACAACCGCCTCAAAAAGCCACCGAATCAAGGGATGAGCACATCCTGCCGAGAAGC
TTCTCTCCGTCTTCCGCGAGGGTGTGGTGTACGGTGCCGGCATTGGCCCGGGCGTGTACG
ACATCCACTCCCCCAGGATCCCGTCCAAGGAGGAGATTGCCGACCGCGTCAACAAGATGC
TCGCTGTGCTCGACACCAACATCCTCTGGGTGAACCCCGACTGCGGTCTCAAGACCCGCA
AGTACGCCGAGGTCAAGCCCGCCCTCACCAACATGGTCGAGGCCGCCAAGCAAATCCGCG
CCGAGCTCGCCAAGGCGCAGTAAGCAGTGCTCGTATAGCAGCTCTCCCCCCCTTTTAATT
GCAAGGAGGATGTCACCGTTGCCATGGCCGGCGTTTTACTT

Homology of Contig U35_39280 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None