barSeed - Barley Seed Development Database

Probe CUST_31165_PI390587928

Source Contig U35_49495

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_31165_PI390587928	Hv_44K_v2	CCATGAATGTCGTTTTCCTAAATCAATTGTATCAAACAAATTGGTGTTTTTGCAGGCCAA	61	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_30834.2	329	2e-24	61 - 120	100	60 / 60	plus	ABC08866
Harvest21	ABC51244	599	3e-25	62 - 121	100	60 / 60	plus
Harvest35	U35_49495	599	3e-25	62 - 121	100	60 / 60	plus

Contig Sequence (599 bp)

>U35_49495 599 Hv_44K_v2
TCTACTCACTTGATCTTGATGCCTTAAATGATCTTCAGTATGCTACCCCTGCTGCCCATT
ACCATGAATGTCGTTTTCCTAAATCAATTGTATCAAACAAATTGGTGTTTTTGCAGGCCA
ATTTATGGGCTTATATTATTGTACAAATGGCGACCTCCAGAAAAAGATGAGCGCCCTGTT
ATCAAGGATGCGGTCCCAAATGTATTCTTTGCTAATCAGATAATTAACAGCGCATGTGCA
ACCCAAGCTATTGTTTCTGTTCTGTTGAACTCTTCTGGCATCACCCTTAGCGAGGACCTC
AAAAAGCTCAAGGAGTTTGCAAAGGACATGCCGCCGGAGCTCAAAGGATTGGCTATAGTG
AATTATGAAAGCATTCGTATAACCAGTAACTCGTTTGCAAGGTCAGATGACTACTCTGAG
GAACAGAAATCCAAGGATGATGATGTCTACCATTTCATTAGCTATGTTCCTGTTGACGGC
GTCCTGTATGTTCCTGTTGACGGCGTCCTGTATCTTCCTGTTGATTGGCTATGTGCATGT
TTATAAACATATTTTCATTGTGGTGTAATATGTGTTTATCTTGAACCTTCTTGTGGGTG

Homology of Contig U35_49495 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g08370.1	330	5e-63	protein\|ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed
Brachypodium v1_2	Bradi3g06000.1	328	1e-72
Arabidopsis v10	None