- Probe CUST_3115_PI390587928
- Source Contig U35_6579
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_3115_PI390587928 | Hv_44K_v2 | TGGTAATGAAAATGTTGGAGTGGCACTTTTGACGTACCCTGTTCTAATGGCTTCTGACAT | 352 | GeneList: darkorange MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.085 | 0.927 | 1.653 | 1.621 | 0.789 | 0.746 |
| Raw | 55.524 | 73.776 | 117.693 | 183.354 | 30.501 | 32.183 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_68915.1 | 1286 | 2e-24 | 659 - 718 | 100 | 60 / 60 | plus | ABC13379 |
| MLOC | MLOC_68915.3 | 1235 | 2e-24 | 654 - 713 | 100 | 60 / 60 | plus | ABC13379 |
| MLOC | MLOC_68915.2 | 2251 | 6e-24 | 646 - 704 | 100 | 59 / 59 | plus | ABC13378 ABC13379 |
| JLOC1 | JLOC1_45643.2 | 2250 | 8e-25 | 639 - 698 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_45643.1 | 2253 | 3e-24 | 643 - 701 | 100 | 59 / 59 | plus | |
| Harvest21 | ABC13396 | 730 | 3e-25 | 547 - 606 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC13397 | 719 | 1e-24 | 558 - 616 | 100 | 59 / 59 | plus | |
| Harvest35 | U35_6579 | 537 | 3e-25 | 353 - 412 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_6580 | 719 | 1e-24 | 558 - 616 | 100 | 59 / 59 | plus |
Contig Sequence (537 bp)
>U35_6579 537 Hv_44K_v2 AGAGTAGTTTCTGGTGTACAGCCAACAGGAATGGTGCACCTTGGAAATTATCTTGGTGCT ATTAAGAACTGGGTTGCACTTCAGGATTTGTATGAGACATTCTTTTTCATTGTGGACCTG CATGCGATTACCTTGCCGTATGATGCACCGGAGCTATCTAAAGCTACAAGAAGCACCGCT GCAATTTATCTGGCATGCGGCATTGATAGTTCCAAGGCTTCTATTTTTGTACAGTCTCAT GTCCGTGCTCATATCGAGCTGATGTGGCTACTGAGCTCTTCGACTCCTATTGGTTGGCTG AACAAAATGATTCAGTTCAAAGAGAAGTCACGCAAGGCGGTGCGTCATTCGCTGGTAATG AAAATGTTGGAGTGGCACTTTTGACGTACCCTGTTCTAATGGCTTCTGACATCCTTCTGT ACCAGTCCGATTTGGTACCTGTTGGTGAAGATCAGACACAACATTTGGAATTAACTCGTG AAATTTCTGAACGTGTAAATAATCTATATGGTGGAAGAAAGTGGAAGAAATTGGGAG
Homology of Contig U35_6579 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os01g54020.1 | 400 | 1e-64 | protein|tRNA synthetase, putative, expressed |
| Brachypodium v1_2 | Bradi2g49520.2 | 358 | 1e-71 | |
| Arabidopsis v10 | AT2G25840.2 | 412 | 8e-73 | | Symbols: OVA4 | Nucleotidylyl transferase superfamily protein | chr2:11021924-11025158 FORWARD LENGTH=412 |